MEI Kodierung der frühesten Notation in linienlosen Neumen

Das Optical Neume Recognition Project (ONRP) hat die digitale Kodierung von musikalischen Notationszeichen aus dem Jahr um 1000 zum Ziel – ein ambitioniertes Vorhaben, das die Projektmitglieder veranlasste, verschiedenste methodische Ansätze zu evaluieren. Die Optical Music Recognition-Software soll eine linienlose Notation aus einem der ältesten erhaltenen Quellen mit Notationszeichen, dem Antiphonar Hartker aus der Benediktinerabtei St. Gallen (Schweiz), welches heute in zwei Bänden in der Stiftsbibliothek in St. Gallen aufbewahrt wird, erfassen. Aufgrund der handgeschriebenen, linienlosen Notation stellt dieser Gregorianische Gesang den Forscher vor viele Herausforderungen. Das Werk umfasst über 300 verschiedene Neumenzeichen und ihre Notation, die mit Hilfe der Music Encoding Initiative (MEI) erfasst und beschrieben werden sollen. Der folgende Artikel beschreibt den Prozess der Adaptierung, um die MEI auf die Notation von Neumen ohne Notenlinien anzuwenden. Beschrieben werden Eigenschaften der Neumennotation, um zu verdeutlichen, wo die Herausforderungen dieser Arbeit liegen sowie die Funktionsweise des Classifiers, einer Art digitalen Neumenwörterbuchs

Additional file 14: Table S5. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

All the primers used in this paper. (XLSX 10 kb

Additional file 11: Figure S7. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

Venn diagram of transcripts identified in cotton under different abiotic stress conditions. Cold, drought and heat. (TIF 48 kb

Additional file 12: Figure S8. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

Comparisons of expression profiles of nine representative homoeologous gene pairs of AP2/EREBP family of G. hirsutum in various tissues. Represented in y-axes are the FPKM levels of the RNA-seq data [42] and the x-axes are ten representative tissues. (TIF 189 kb

Additional file 1: Table S1. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

AP2/EREBP superfamily genes in G. raimondii. (XLS 46 kb

Additional file 13: Figure S9. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

Expression profiles (in log2 based fold change) of tandem duplicated genes in G. hirsutum TM-1. Each block indicates one tandem duplicated gene cluster. The scale bars represent log2 of the RPKM values. (TIF 323 kb

Additional file 6: Table S3. of Expansion and stress responses of the AP2/EREBP superfamily in cotton

Tandem duplicated genes of AP2/EREBP superfamily genes in G. raimondii. (XLS 33 kb

Favorable QTL Alleles for Yield and Its Components Identified by Association Mapping in Chinese Upland Cotton Cultivars

<div><p>Linkage disequilibrium based association mapping is a powerful tool for dissecting the genetic basis underlying complex traits. In this study, an association mapping panel consisting of 356 representative Upland cotton cultivars was constructed, evaluated in three environments and genotyped using 381 SSRs to detect molecular markers associated with lint yield and its components. The results showed that abundant phenotypic and moderate genetic diversities existed within this germplasm panel. The population could be divided into two subpopulations, and weak relatedness was detected between pair-wise accessions. LD decayed to the background (<i>r</i>² = 0.1182, P≤0.01), <i>r</i>² = 0.1 and <i>r</i>² = 0.2 level within 12–13 cM, 17–18 cM and 3–4 cM, respectively, providing the potential for association mapping of agronomically important traits in Chinese Upland cotton. A total of 55 marker-trait associations were detected between 26 SSRs and seven lint yield traits, based on a mixed linear model (MLM) and Bonferroni correction (<i>P</i>≤0.05/145, −log₁₀<i>P</i>≥3.46). Of which 41 could be detected in more than one environment and 17 markers were simultaneously associated with two or more traits. Many associations were consistent with QTLs identified by linkage mapping in previous reports. Phenotypic values of alleles of each loci in 41 stably detected associations were compared, and 23 favorable alleles were identified. Population frequency of each favorable allele in historically released cultivar groups was also evaluated. The QTLs detected in this study will be helpful in further understanding the genetic basis of lint yield and its components, and the favorable alleles may facilitate future high-yield breeding by genomic selection in Upland cotton.</p></div

Detection and mapping of homologous and homoeologous segments in homoeologous groups of allotetraploid cotton by BAC-FISH-1

<p><b>Copyright information:</b></p><p>Taken from "Detection and mapping of homologous and homoeologous segments in homoeologous groups of allotetraploid cotton by BAC-FISH"</p><p>http://www.biomedcentral.com/1471-2164/8/178</p><p>BMC Genomics 2007;8():178-178.</p><p>Published online 19 Jun 2007</p><p>PMCID:PMC1906772.</p><p></p>ng polymorphic loci which were underlined. Other duplicated loci were also connected by solid bar between the homoeologous chromosomes

Allele frequency for each favorable QTL allele in historically released Chinese Upland cotton cultivar groups.^a

<p>^a CK, I, II, III, IV, V and VI indicates the founder parent group (CK), and the Chinese cultivars released in 1930–1960, 1961–1970, 1971–1980, 1981–1990, 1991–2000 and 2000–2005, respectively.</p