Additional file 3 of Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)

Gene ontology (GO) terms enrichment in Southern bluefin tuna crude testis vs. Percoll-enriched testis cells transcriptome. Enriched GO terms in crude testis vs. Percoll-enriched testis cells, along with the corresponding ontology, term description, number of genes associated (total count and differentially expressed) and the p-value and p-value (false discovery rate adjusted p-value) statistics as determined by goseq. (XLSX 71.6 kb

Additional file 4 of Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)

Differentially expressed gonad development and germ cell-related genes in crude vs. Percoll-enriched testis cells. ORF – Open reading frame. Blast hit species, e-value, Bit Score – Blast best hit details. Log2FC – Fold change values (log2 transformed) as determined by edgeR, positive values represent over-expression in testis cells, negative values are over-expressed in the ovary cells. p-value, FDR (false discovery rate adjusted p-value) – edgeR differential expression analysis statistics. KEGG – Kyoto encyclopedia of genes and genomes function. (XLSX 26.5 kb

Additional file 2: Table S2. of GPCR and IR genes in Schistosoma mansoni miracidia

Sequences used for phylogenetic analysis in Fig. 4a. (XLSX 19 kb

Additional file 1: Table S1. of GPCR and IR genes in Schistosoma mansoni miracidia

TMHMM, Phobius and HMMer search results during the identification of putative GPCRs within the S. mansoni genome. (XLSX 98 kb

Additional file 10: of The evolution of ependymin-related proteins

Sources of sequence data used in this study. Description of Data: Excel file providing details of data sources, including web link and references, if applicable. (XLSX 65 kb

Additional file 1: of The evolution of ependymin-related proteins

Distribution of EPDR genes in Eukaryota. Results of EPDR survey by species, including total number of sequences searched, number of EPDRs found, and clade membership of detected EPDRs. (XLSX 59 kb

Additional file 2: of The evolution of ependymin-related proteins

Note on incorrectly predicted gene models. Description of Data: Description of incorrectly predicted gene models within several metazoan genomes. (PDF 684 kb

Additional file 4: of The evolution of ependymin-related proteins

Full ependymin alignment, trimmed. Description of Data: Alignment of all 420 sequences analysed in this study, trimmed. The phylogenetic analysis was performed using this alignment. (FA 84 kb

Additional file 7: of The evolution of ependymin-related proteins

Results of phylogenetic analysis on reduced dataset. Description of Data: Summary tree of phylogenetic analysis conducted after the removal of problematic taxa. (PDF 424 kb

Additional file 9: of The evolution of ependymin-related proteins

Predicted model scores and ligands for representative EPDR sequences. Description of Data: Table showing clade membership, model C-Scores, and predicted ligands of selected EPDR sequences. (PDF 60 kb