C_atl_RADseq_de_novo_assembly

Species: Cedrus atlantica Manetti Number of individuals: one single adult individual coming from the Luberon forest(43°47' N / 5°12' E, France) Plant tissue: needles (diploid) Sequencing method: Restriction site Associated DNA sequencing, paired-end sequencing using the Illumina HiSeq2000 platform (Illumina Inc., San Diego, CA) (2 x 101 bp) Data description: 66,656 contigs generated by de novo assembly Assembly tool: Velvet 1.2.06 (Zerbino & Birney 2008

C_atl_mRNAseq_de_novo_assembly

Species: Cedrus atlantica Manetti Number of indiivudals: one single 2-year-old seedling that originated from the the Luberon forest (43°47' N / 5°12' E, France) and was grown in a greenhouse in a pot Plant tissues: needles and roots (diploid) Sequencing method: transcriptome sequencing, paired-end sequencing using the Illumina HiSeq2000 platform (Illumina Inc., San Diego, CA) (2 x 101 bp) Data description: 130,184 contigs generated by de novo assembly Assembly tool: CLC Genomics Workbench 4.8 (CLC bio, Cambridge, MA

Pinus halepensis GO annotation

Assembled sequences and singletons subjected to BLAST2GO similarity searches and annotated with Gene Ontology (GO)

Pinus halepensis__KEGG_annotation

Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway annotations of the assembled transcripts