Comparative statistics of various parameters of whole genome and gene architecture of arabidopsis, rice, sorghum and maize.

Comparative statistics of various parameters of whole genome and gene architecture of arabidopsis, rice, sorghum and maize.</p

The relationship between 6 different G+C content parameters of plant genes and their expression values.

Each panel shows a bin number on x-axis versus the average parameter values with increase in expression level and breadth on y-axis. The dataset is divided into 10 equal bins with 10% of data in each bin. Red and green color dots represent expression level and expression breadth respectively.</p

The influence of parameters on expression level or breadth is plotted for arabidopsis, rice, sorghum and maize.

Ratios of the coefficient b1/b2 (from Table 3) are plotted only for significant p-values of either of the measures (breadth/level) with same sign. Corresponding p-values for breadth and level individually are shown on left of each plot with values increasing from cyan to magenta color (the empty color bar represents insignificant p-values).</p

Gene Ontology (GO) enrichment is represented for broadly and narrowly expressed genes.

(A) GO terms of broadly expressed (EB) and narrowly expressed (EN) genes are shown for arabidopsis, rice, sorghum and maize. (B) GO term enrichment for biological processes is shown for different size orthologous groups of rice. The functional groups are represented in colors ranging from black through red to yellow based on their increasing significance.</p

Pearson’s correlation coefficient values for gene expression measures vs gene architecture as well as promoter properties are presented here.

Pearson’s correlation coefficient values for gene expression measures vs gene architecture as well as promoter properties are presented here.</p

Beta-coefficient values of arabidopsis, rice, sorghum and maize.

Beta-coefficient values of arabidopsis, rice, sorghum and maize.</p

Bendability is plotted for the promoter region (-500 to +500) of top 10% and bottom 10% of the expression breadth (left panel) and level (right panel).

Bendability or flexibility, trinucleotide secondary structural properties were measured by predicting DNaseI sensitivity and Nucleosome position preference (NPP). B stands for broadly expressed dataset and N narrowly expressed, whereas H represents highly expressed and L lowly expressed dataset.</p

Structural feature parameter values for the promoter regions (-200 to 0) of arabidopsis, rice sorghum and maize.

The averaged value of each 10 percentile bin for AFE, DNase 1 sensitivity, NPP and curvature are plotted. Genes were sorted based on the average expression value and split into 10 equal bins, where each bin contains 10% of the data. The bins are numbered 1 to 10 with increasing value of expression level and breadth.</p

The relationship between 7 different length parameters of plant genes and their expression values.

Each panel shows bin number (each containing 10% data) on x-axis versus the average parameter values with increase in expression level and breadth on y-axis. The dataset is divided into 10 equal bins with 10% of data in each bin. Red and green color dots represent expression level and expression breadth respectively.</p

The relationship between size of orthologous group and expression level and expression breadth.

Top and bottom spaces of the box are 25th and 75th percentiles of the dataset. Here the mid line of the box represents the median position and the outliers are presented in red color.</p