In-situ H2O removal via hydorphilic membranes during Fischer-Tropsch and other fuel-related synthesis reactions

The general objective of this thesis was to explore the potential of in-situ H2O removal during fuel-related synthesis reactions with focus on in-situ H2O removal by hydrophilic membranes and by chemical reaction. It is demonstrated that in-situ H2O removal through vapour permeation during CO2 hydrogenation to Fischer-Tropsch hydrocarbons and during DME/DEE synthesis leads to increased conversion and yield levels, which are directly linked to the degree of H2O recovery

Interdisciplinary observations of the under-ice environment using a remotely operated vehicle

Improving our understanding of the climate and ecosystem of the sea-ice covered Arctic Ocean was a key objective during MOSAiC. We aimed for a better understanding of the linkages of physical and biological processes at the interface between sea ice and ocean. To enhance the quantification of these linkages, year-round observations of physical, biological, and chemical parameters are needed. We operated a remotely operated vehicle (ROV) equipped with an interdisciplinary sensor platform to simultaneously measure these parameters underneath the drifting sea ice. These observations were made synchronous in time and place enabling a description of their spatial and temporal variability. Overall, we completed more than 80 surveys covering all seasons and various sea ice and surface conditions. We focused on optical parameters, sea-ice bottom topography, and upper ocean physical and biological oceanography. In addition, visual documentation of the under-ice environment was performed, nets for zooplankton were towed, and the ROV was used for instrument deployment and maintenance. Here, we present all ROV sensor data, allowing for a comprehensive picture of the under-ice environment. We are inviting discussions on further collaboration in data analyses and usage, in particular co-location and merging with other datasets from MOSAiC and other (also future) projects

Clinical relevance of molecular characteristics in Burkitt lymphoma differs according to age

While survival has improved for Burkitt lymphoma patients, potential differences in outcome between pediatric and adult patients remain unclear. In both age groups, survival remains poor at relapse. Therefore, we conducted a comparative study in a large pediatric cohort, including 191 cases and 97 samples from adults. While TP53 and CCND3 mutation frequencies are not age related, samples from pediatric patients showed a higher frequency of mutations in ID3, DDX3X, ARID1A and SMARCA4, while several genes such as BCL2 and YY1AP1 are almost exclusively mutated in adult patients. An unbiased analysis reveals a transition of the mutational profile between 25 and 40 years of age. Survival analysis in the pediatric cohort confirms that TP53 mutations are significantly associated with higher incidence of relapse (25 ± 4% versus 6 ± 2%, p-value 0.0002). This identifies a promising molecular marker for relapse incidence in pediatric BL which will be used in future clinical trials

AI is a viable alternative to high throughput screening: a 318-target study

: High throughput screening (HTS) is routinely used to identify bioactive small molecules. This requires physical compounds, which limits coverage of accessible chemical space. Computational approaches combined with vast on-demand chemical libraries can access far greater chemical space, provided that the predictive accuracy is sufficient to identify useful molecules. Through the largest and most diverse virtual HTS campaign reported to date, comprising 318 individual projects, we demonstrate that our AtomNet® convolutional neural network successfully finds novel hits across every major therapeutic area and protein class. We address historical limitations of computational screening by demonstrating success for target proteins without known binders, high-quality X-ray crystal structures, or manual cherry-picking of compounds. We show that the molecules selected by the AtomNet® model are novel drug-like scaffolds rather than minor modifications to known bioactive compounds. Our empirical results suggest that computational methods can substantially replace HTS as the first step of small-molecule drug discovery

Shifting the limits in wheat research and breeding using a fully annotated reference genome

Introduction: Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth, contributing about a fifth of the total calories consumed by humans. Consequently, wheat yields and production affect the global economy, and failed harvests can lead to social unrest. Breeders continuously strive to develop improved varieties by fine-tuning genetically complex yield and end-use quality parameters while maintaining stable yields and adapting the crop to regionally specific biotic and abiotic stresses. Rationale: Breeding efforts are limited by insufficient knowledge and understanding of wheat biology and the molecular basis of central agronomic traits. To meet the demands of human population growth, there is an urgent need for wheat research and breeding to accelerate genetic gain as well as to increase and protect wheat yield and quality traits. In other plant and animal species, access to a fully annotated and ordered genome sequence, including regulatory sequences and genome-diversity information, has promoted the development of systematic and more time-efficient approaches for the selection and understanding of important traits. Wheat has lagged behind, primarily owing to the challenges of assembling a genome that is more than five times as large as the human genome, polyploid, and complex, containing more than 85% repetitive DNA. To provide a foundation for improvement through molecular breeding, in 2005, the International Wheat Genome Sequencing Consortium set out to deliver a high-quality annotated reference genome sequence of bread wheat. Results: An annotated reference sequence representing the hexaploid bread wheat genome in the form of 21 chromosome-like sequence assemblies has now been delivered, giving access to 107,891 high-confidence genes, including their genomic context of regulatory sequences. This assembly enabled the discovery of tissue- and developmental stage–related gene coexpression networks using a transcriptome atlas representing all stages of wheat development. The dynamics of change in complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. Aspects of the future value of the annotated assembly for molecular breeding and research were exemplarily illustrated by resolving the genetic basis of a quantitative trait locus conferring resistance to abiotic stress and insect damage as well as by serving as the basis for genome editing of the flowering-time trait. Conclusion: This annotated reference sequence of wheat is a resource that can now drive disruptive innovation in wheat improvement, as this community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding. Importantly, the bioinformatics capacity developed for model-organism genomes will facilitate a better understanding of the wheat genome as a result of the high-quality chromosome-based genome assembly. By necessity, breeders work with the genome at the whole chromosome level, as each new cross involves the modification of genome-wide gene networks that control the expression of complex traits such as yield. With the annotated and ordered reference genome sequence in place, researchers and breeders can now easily access sequence-level information to precisely define the necessary changes in the genomes for breeding programs. This will be realized through the implementation of new DNA marker platforms and targeted breeding technologies, including genome editing

In-situ H2O removal via hydorphilic membranes during Fischer-Tropsch and other fuel-related synthesis reactions

The general objective of this thesis was to explore the potential of in-situ H2O removal during fuel-related synthesis reactions with focus on in-situ H2O removal by hydrophilic membranes and by chemical reaction. It is demonstrated that in-situ H2O removal through vapour permeation during CO2 hydrogenation to Fischer-Tropsch hydrocarbons and during DME/DEE synthesis leads to increased conversion and yield levels, which are directly linked to the degree of H2O recovery

First case of bloodstream infection caused by Mixta hanseatica sp. nov., a novel species within the Mixta genus of the Erwiniaceae family

Members of the Erwiniaceae family very rarely cause infections in humans. Here we describe the first case of a bloodstream infection due to Mixta hanseatica sp. nov., a novel member of the Erwiniaceae family

Downward spectral solar irradiance as measured in different depths under sea ice (transmitted irradiance) at station PS122/2_25-104 on 2020-02-22

Downward spectral solar irradiance as measured in different depths under sea ice (transmitted irradiance). The irradiance sensor (cos-collector) was installed on the ROV

Fraction of spectral solar irradiance transmitted through snow and sea ice as measured in different depths under sea ice (transmittance) at station PS122/4_48-4 on 2020-07-21

Fraction of spectral solar irradiance transmitted through snow and sea ice as measured in different depths under sea ice (transmittance)

Fraction of spectral solar radiance transmitted through snow and sea ice as measured in different depths under sea ice (transflectance) at station PS122/4_45-129 on 2020-07-03

Fraction of spectral solar irradiance transmitted through snow and sea ice as measured in different depths under sea ice (transmittance)