Rate of lineage origin explains the diversity anomaly in the World’s mangrove vegetation

The contribution of nonecological factors to global patterns in diversity is evident when species richness differs between regions with similar habitats and geographic area. Mangrove environments in the Eastern Hemisphere harbor six times as many species of trees and shrubs as similar environments in the New World. Genetic divergence of mangrove lineages from terrestrial relatives, in combination with fossil evidence, suggests that mangrove diversity is limited by evolutionary transition into the stressful marine environment, the number of mangrove lineages has increased steadily over the Tertiary with little global extinction, and the diversity anomaly in mangrove vegetation reflects regional differences in the rate of origin of new mangrove lineages

Reasoning by analogy in the generation of domain acceptable ontology refinements

Refinements generated for a knowledge base often involve the learning of new knowledge to be added to or replace existing parts of a knowledge base. However, the justifiability of the refinement in the context of the domain (domain acceptability) is often overlooked. The work reported in this paper describes an approach to the generation of domain acceptable refinements for incomplete and incorrect ontology individuals through reasoning by analogy using existing domain knowledge. To illustrate this approach, individuals for refinement are identified during the application of a knowledge-based system, EIRA; when EIRA fails in its task, areas of its domain ontology are identified as requiring refinement. Refinements are subsequently generated by identifying and reasoning with similar individuals from the domain ontology. To evaluate this approach EIRA has been applied to the Intensive Care Unit (ICU) domain. An evaluation (by a domain expert) of the refinements generated by EIRA has indicated that this approach successfully produces domain acceptable refinements

The cost-efficiency of water-based marine emission abatement

Today about 90 per cent of the world’s trade is concluded by using ships. This entails that the seafaring is one of the main attempters for the poisonous greenhouse gases. Through the globalization and the tendency to produce and sell goods all around the world, leads to wider use of ship transportation and hence increasing emissions. According to this fact it is important to find ways to abate ship emissions. This is supported with stricter emission limits in the Baltic Sea. To meet these regulations, vessels need to have installed an emission abatement system. In the range of this thesis the two water-based NOx abatement measures DWI and HAM are observed, especially regarding their cost-effectiveness. To find a figure how many € per abated ton of NOx these technologies cost, a case study with two ships was made. One ship was retrofitted with a HAM system and the other ship was new build with DWI technology. The calculations were based on figures found in literature and the ship owners. In conclusion, the costs per abated ton of NOx vary greatly with the specific ship. For DWI they are in the range from 243,25 €/t to 928,08 €/t. The HAM system is not so cost-intensive it varies from 282,58 €/t to 378,46 €/t

Postglacial migration supplements climate in determining plant species ranges in Europe

The influence of dispersal limitation on species ranges remains controversial. Considering the dramatic impacts of the last glaciation in Europe, species might not have tracked climate changes through time and, as a consequence, their present-day ranges might be in disequilibrium with current climate. For 1016 European plant species, we assessed the relative importance of current climate and limited postglacial migration in determining species ranges using regression modelling and explanatory variables representing climate, and a novel species-specific hind-casting-based measure of accessibility to postglacial colonization. Climate was important for all species, while postglacial colonization also constrained the ranges of more than 50 per cent of the species. On average, climate explained five times more variation in species ranges than accessibility, but accessibility was the strongest determinant for one-sixth of the species. Accessibility was particularly important for species with limited long-distance dispersal ability, with southern glacial ranges, seed plants compared with ferns, and small-range species in southern Europe. In addition, accessibility explained one-third of the variation in species' disequilibrium with climate as measured by the realized/potential range size ratio computed with niche modelling. In conclusion, we show that although climate is the dominant broad-scale determinant of European plant species ranges, constrained dispersal plays an important supplementary role

Is cell-mediated immunity related to the evolution of life-history strategies in birds?

According to life-history theory, the development of immune function should be balanced through evolutionary optimization of the allocation of resources to reproduction and through mechanisms that promote survival. We investigated interspecific variability in cell-mediated immune response (CMI), as measured by the phytohaemagglutinin (PHA) assay, in relation to clutch size, longevity and other life-history traits in 50 species of birds. CMI exhibited significant repeatability within species, and PHA responses in chicks were consistently stronger than in adults. Univariate tests showed a variety of significant relationships between the CMI of both chicks and adults with respect to size, development period and lifespan, but not clutch size or prevalence of blood parasites in adults. Multivariate analyses confirmed these patterns but independent variables were too highly correlated to isolate unique influences on CMI. The positive relationship of chick CMI to nestling period is further complicated by a parallel relationship of chick CMI to the age at testing. However, multivariate analysis showed that chick CMI varies uniquely with length of the nestling period. Adult CMI was associated with a strong life-history axis of body size, development rate and longevity. Therefore, adult CMI may be associated with prevention and repair mechanisms related to long lifespan, but it also may be allometrically related to body size through other pathways. Neither chick CMI nor adult CMI was related to clutch size, contradicting previous results linking parasite-related mortality to CMI and the evolution of clutch size (reproductive investment) in birds.Peer Reviewe

Three-steps in one-pot: whole-cell biocatalytic synthesis of enantiopure (+)- and (−)-pinoresinol via kinetic resolution

Additional file 5. HPLC chromatograms of enantiomeric separations of reaction products. a Application of AtPrR2; b application of FiPLR. [3a] = (+)-pinoresinol 3a, [3b] = (−)-pinoresinol 3b, [4a] = (+)-lariciresinol 4a, [4b] = (−)-lariciresinol 4b, [5a] = (−)-secoisolariciresinol 5a

Protracted speciation revitalizes the neutral theory of biodiversity.

Understanding the maintenance and origin of biodiversity is a formidable task, yet many ubiquitous ecological patterns are predicted by a surprisingly simple and widely studied neutral model that ignores functional differences between species. However, this model assumes that new species arise instantaneously as singletons and consequently makes unrealistic predictions about species lifetimes, speciation rates and number of rare species. Here, we resolve these anomalies - without compromising any of the original models existing achievements and retaining computational and analytical tractability - by modelling speciation as a gradual, protracted, process rather than an instantaneous event. Our model also makes new predictions about the diversity of incipient species and rare species in the metacommunity. We show that it is both necessary and straightforward to incorporate protracted speciation in future studies of neutral models, and argue that non-neutral models should also model speciation as a gradual process rather than an instantaneous one

Diversity regulation at macro‐scales: species richness on oceanic archipelagos

AimUnderstanding the mechanisms that generate diversity patterns requires analyses at spatial and temporal scales that are appropriate to the dispersal capacities and ecological requirements of organisms. Oceanic archipelagos provide a range of island sizes and configurations which should predictably influence colonization, diversification and extinction. To explore the influence of these factors on archipelagic diversity, we relate the numbers of native and endemic species of vascular plants, birds, land snails and spiders – taxa having different dispersal capabilities and population densities – to the number and sizes of islands in the major oceanic archipelagos of the globe.LocationFourteen major oceanic archipelagos of the globe.MethodsSpecies richness was collated for native and endemic species in each archipelago. We used linear mixed effect models to quantify the influence on diversity of total area, number of islands, isolation and latitude. We then applied process‐based modelling in a Bayesian framework to evaluate how speciation, colonization and extinction are influenced by characteristics of archipelagos associated with species richness, i.e. area, isolation and number of islands.ResultsWe found parallel scaling of species richness among taxa with respect to total area and number of islands across groups. The process‐based model supported effects of isolation on colonization and of area and number of islands on extinction rates, with the scaling exponents mostly similar across taxa. Data are consistent with a range of scaling exponents for speciation rate, implying that those relationships are difficult to infer from the data used.ConclusionsWe demonstrate an unexpected parallel scaling of species richness of four taxa with area and number of islands for the major oceanic archipelagos of the globe. We infer that this scaling arises through similar effects of the physical characteristics of archipelagos on extinction, colonization and speciation rates across these disparate taxa, indicating that similar mechanisms have created variation in diversity.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/111231/1/geb12301.pd