72 research outputs found

    Moran plot of RBP predicted values.

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    This study combined geographic factors to predict Chinese healthy male RBP reference values from a geographic perspective, with the aim of exploring the spatial distribution and regional differences in Chinese healthy male Retinol-Binding Protein(RBP) reference values, and then providing a theoretical basis for medical diagnosis of healthy male RBP reference values in different regions of China. Using the actual measured RBP values of 24,502 healthy men in 256 cities in China combined with 16 geographical factors as the base data, the spatial autocorrelation, correlation analysis and support vector machine were used to predict the RBP reference values of healthy men in 2322 cities in China, and to generate a spatial distribution map of the RBP reference values of healthy men in China. It was found that the spatial distribution of healthy male RBP reference values in China showed a trend of gradual increase from the first to the third terrain steps. Combined with the distribution map, it is suggested that the RBP reference values of healthy men in China should be divided into the low value zone of the first-level terrain step (25mg/L~40mg/L), the middle value zone of the second-level terrain step (40mg/L~45mg/L) and the high value zone of the third-level terrain step (45mg/L~52mg/L).</div

    Trend surface analysis of the predicted RBP values.

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    Trend surface analysis of the predicted RBP values.</p

    Insights into Pancreatic Cancer Etiology from Pathway Analysis of Genome-Wide Association Study Data

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    <div><h3>Background</h3><p>Pancreatic cancer is the fourth leading cause of cancer death in the U.S. and the etiology of this highly lethal disease has not been well defined. To identify genetic susceptibility factors for pancreatic cancer, we conducted pathway analysis of genome-wide association study (GWAS) data in 3,141 pancreatic cancer patients and 3,367 controls with European ancestry.</p><h3>Methods</h3><p>Using the gene set ridge regression in association studies (GRASS) method, we analyzed 197 pathways identified from the Kyoto Encyclopedia of Genes and Genomes database. We used the logistic kernel machine (LKM) test to identify major contributing genes to each pathway. We conducted functional enrichment analysis of the most significant genes (<em>P</em><0.01) using the Database for Annotation, Visualization, and Integrated Discovery (DAVID).</p><h3>Results</h3><p>Two pathways were significantly associated with risk of pancreatic cancer after adjusting for multiple comparisons (<em>P</em><0.00025) and in replication testing: neuroactive ligand-receptor interaction, (<em>Ps</em><0.00002), and the olfactory transduction pathway (<em>P</em>β€Š=β€Š0.0001). LKM test identified four genes that were significantly associated with risk of pancreatic cancer after Bonferroni correction (<em>P</em><1Γ—10<sup>βˆ’5</sup>): <em>ABO, HNF1A, OR13C4,</em> and <em>SHH.</em> Functional enrichment analysis using DAVID consistently found the G protein-coupled receptor signaling pathway (including both neuroactive ligand-receptor interaction and olfactory transduction pathways) to be the most significant pathway for pancreatic cancer risk in this study population.</p><h3>Conclusion</h3><p>These novel findings provide new perspectives on genetic susceptibility to and molecular mechanisms of pancreatic cancer.</p></div

    S1 Data set -

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    This study combined geographic factors to predict Chinese healthy male RBP reference values from a geographic perspective, with the aim of exploring the spatial distribution and regional differences in Chinese healthy male Retinol-Binding Protein(RBP) reference values, and then providing a theoretical basis for medical diagnosis of healthy male RBP reference values in different regions of China. Using the actual measured RBP values of 24,502 healthy men in 256 cities in China combined with 16 geographical factors as the base data, the spatial autocorrelation, correlation analysis and support vector machine were used to predict the RBP reference values of healthy men in 2322 cities in China, and to generate a spatial distribution map of the RBP reference values of healthy men in China. It was found that the spatial distribution of healthy male RBP reference values in China showed a trend of gradual increase from the first to the third terrain steps. Combined with the distribution map, it is suggested that the RBP reference values of healthy men in China should be divided into the low value zone of the first-level terrain step (25mg/L~40mg/L), the middle value zone of the second-level terrain step (40mg/L~45mg/L) and the high value zone of the third-level terrain step (45mg/L~52mg/L).</div

    Correlation test for geographical factors.

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    This study combined geographic factors to predict Chinese healthy male RBP reference values from a geographic perspective, with the aim of exploring the spatial distribution and regional differences in Chinese healthy male Retinol-Binding Protein(RBP) reference values, and then providing a theoretical basis for medical diagnosis of healthy male RBP reference values in different regions of China. Using the actual measured RBP values of 24,502 healthy men in 256 cities in China combined with 16 geographical factors as the base data, the spatial autocorrelation, correlation analysis and support vector machine were used to predict the RBP reference values of healthy men in 2322 cities in China, and to generate a spatial distribution map of the RBP reference values of healthy men in China. It was found that the spatial distribution of healthy male RBP reference values in China showed a trend of gradual increase from the first to the third terrain steps. Combined with the distribution map, it is suggested that the RBP reference values of healthy men in China should be divided into the low value zone of the first-level terrain step (25mg/L~40mg/L), the middle value zone of the second-level terrain step (40mg/L~45mg/L) and the high value zone of the third-level terrain step (45mg/L~52mg/L).</div

    Prediction value of RBP in some cities.

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    This study combined geographic factors to predict Chinese healthy male RBP reference values from a geographic perspective, with the aim of exploring the spatial distribution and regional differences in Chinese healthy male Retinol-Binding Protein(RBP) reference values, and then providing a theoretical basis for medical diagnosis of healthy male RBP reference values in different regions of China. Using the actual measured RBP values of 24,502 healthy men in 256 cities in China combined with 16 geographical factors as the base data, the spatial autocorrelation, correlation analysis and support vector machine were used to predict the RBP reference values of healthy men in 2322 cities in China, and to generate a spatial distribution map of the RBP reference values of healthy men in China. It was found that the spatial distribution of healthy male RBP reference values in China showed a trend of gradual increase from the first to the third terrain steps. Combined with the distribution map, it is suggested that the RBP reference values of healthy men in China should be divided into the low value zone of the first-level terrain step (25mg/L~40mg/L), the middle value zone of the second-level terrain step (40mg/L~45mg/L) and the high value zone of the third-level terrain step (45mg/L~52mg/L).</div

    Correlation analysis between geographical factors.

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    Correlation analysis between geographical factors.</p

    A Taylor plot of the RBP prediction model.

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    This study combined geographic factors to predict Chinese healthy male RBP reference values from a geographic perspective, with the aim of exploring the spatial distribution and regional differences in Chinese healthy male Retinol-Binding Protein(RBP) reference values, and then providing a theoretical basis for medical diagnosis of healthy male RBP reference values in different regions of China. Using the actual measured RBP values of 24,502 healthy men in 256 cities in China combined with 16 geographical factors as the base data, the spatial autocorrelation, correlation analysis and support vector machine were used to predict the RBP reference values of healthy men in 2322 cities in China, and to generate a spatial distribution map of the RBP reference values of healthy men in China. It was found that the spatial distribution of healthy male RBP reference values in China showed a trend of gradual increase from the first to the third terrain steps. Combined with the distribution map, it is suggested that the RBP reference values of healthy men in China should be divided into the low value zone of the first-level terrain step (25mg/L~40mg/L), the middle value zone of the second-level terrain step (40mg/L~45mg/L) and the high value zone of the third-level terrain step (45mg/L~52mg/L).</div

    Scatter plot of RBP predicted values versus geographic factors.

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    Scatter plot of RBP predicted values versus geographic factors.</p

    Spatial autocorrelation analysis of the RBP sample data.

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    Spatial autocorrelation analysis of the RBP sample data.</p
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