Supplementary Figure 5 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Figure 5. A) Receiver Operator Curve (ROC), for the accuracy of the epigenetic lymph node prediction signature in cross validation. B) Examples of FLI1 and IRX4 immunohistochemical staining of a PeCa TMA, in samples showing either methylation.</p

Supplementary Table 2 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Table 2. Primers sequences for A) HPV primers, B)analysis of CDO1 and AR gene expression and C) MSP analysis of HMX3, PPP2R5C, IRF4, FLI1.</p

Supplementary Figure 3 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Figure 3. Methylation profiles of PeCa (green) and normal penile tissue (red) across canonical gene structure</p

Supplementary Table 1 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Table 1. Patient details for A) Fresh Frozen test cohort and B) archival validation cohort</p

Supplementary Figure 6 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Figure 6. Heatmap of 6 HNSCC cell lines (in duplicate) showing the methylation of the 30 probe set HPV classifier</p

Supplementary Figure 1 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Figure 1. Proportion of MVPs in penile cancers.</p

Supplementary Figure 2 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Figure 2. Comparison of gene expression between PeCa and matched normal tissue for PRC2 complex members</p

Supplementary Figure 4 from Epigenetics Markers of Metastasis and HPV-Induced Tumorigenesis in Penile Cancer

Supplementary Figure 4. Comparison of DMR profiles across canonical features for PeCa (green) and normal squamous epithelium (red), for three candidate epigenetically regulated genes involved in the development of penile cancer (AR &CDO1).</p

Additional file 3: Table S2. of UroMark—a urinary biomarker assay for the detection of bladder cancer

RainDance barcode primer sequences. (XLSX 12 kb

Supplementary Methods from <i>CSN1</i> Somatic Mutations in Penile Squamous Cell Carcinoma

Supplementary methods</p