A Hybrid Boundary Element Method for Elliptic Problems with Singularities

The singularities that arise in elliptic boundary value problems are treated locally by a singular function boundary integral method. This method extracts the leading singular coefficients from a series expansion that describes the local behavior of the singularity. The method is fitted into the framework of the widely used boundary element method (BEM), forming a hybrid technique, with the BEM computing the solution away from the singularity. Results of the hybrid technique are reported for the Motz problem and compared with the results of the standalone BEM and Galerkin/finite element method (GFEM). The comparison is made in terms of the total flux (i.e. the capacitance in the case of electrostatic problems) on the Dirichlet boundary adjacent to the singularity, which is essentially the integral of the normal derivative of the solution. The hybrid method manages to reduce the error in the computed capacitance by a factor of 10, with respect to the BEM and GFEM

Optimization of Patterned Surfaces for Improved Superhydrophobicity Through Cost-Effective Large-Scale Computations

The growing need for creating surfaces with specific wetting properties, such as superhyrdophobic behavior, asks for novel methods for their efficient design. In this work, a fast computational method for the evaluation of patterned superhyrdophobic surfaces is introduced. The hydrophobicity of a surface is quantified in energy terms through an objective function. The increased computational cost led to the parallelization of the method with the Message Passing Interface (MPI) communication protocol that enables calculations on distributed memory systems allowing for parametric investigations at acceptable time frames. The method is demonstrated for a surface consisting of an array of pillars with inverted conical (frustum) geometry. The parallel speedup achieved allows for low cost parametric investigations on the effect of the fine features (curvature and slopes) of the pillars on the superhydophobicity of the surface and consequently for the optimization of superhyrdophobic surfaces.Comment: 18 pages, 18 figure

POROUS SURFACES FOR DROPLET ACTUATION AND MOBILITY MANIPULATION USING BACKPRESSURE

In this study we explore the underlying mechanisms of droplet actuation and mobility manipulation, when backpressure is applied through a porous medium under a sessile pinned droplet. Momentum conservation and continuity equations along with the Cahn-Hilliard phase-field equations in a 2D computational domain are used to shed light on the on the droplet actuation and movement mechanisms. The droplet actuation mechanism entails depinning of the receding contact line and movement, by means of a forward wave propagation reaching on the front of the droplet. Eventually, the droplet is skipping forward

Conservation and global distribution of non-canonical antigens in enterotoxigenic Escherichia coli

BACKGROUND: Enterotoxigenic Escherichia coli (ETEC) cause significant diarrheal morbidity and mortality in children of resource-limited regions, warranting development of effective vaccine strategies. Genetic diversity of the ETEC pathovar has impeded development of broadly protective vaccines centered on the classical canonical antigens, the colonization factors and heat-labile toxin. Two non-canonical ETEC antigens, the EtpA adhesin, and the EatA mucinase are immunogenic in humans and protective in animal models. To foster rational vaccine design that complements existing strategies, we examined the distribution and molecular conservation of these antigens in a diverse population of ETEC isolates. METHODS: Geographically diverse ETEC isolates (n = 1159) were interrogated by PCR, immunoblotting, and/or whole genome sequencing (n = 46) to examine antigen conservation. The most divergent proteins were purified and their core functions assessed in vitro. RESULTS: EatA and EtpA or their coding sequences were present in 57.0% and 51.5% of the ETEC isolates overall, respectively; and were globally dispersed without significant regional differences in antigen distribution. These antigens also exhibited \u3e93% amino acid sequence identity with even the most divergent proteins retaining the core adhesin and mucinase activity assigned to the prototype molecules. CONCLUSIONS: EtpA and EatA are well-conserved molecules in the ETEC pathovar, suggesting that they serve important roles in virulence and that they could be exploited for rational vaccine design

Plug actuation and active manipulation in closed monolithic fluidics using backpressure

We explore the mechanisms to actuate and manipulate liquid plugs in monolithic closed channel fluidics with porous hydrophobic walls. Applying a small pressure, as much as 10 mbar, from the rear side of the porous wall, hereafter backpressure, the inherently pinned plug is depinned and flows through downwards the fluidic. The method is reversible in that by removing the backpressure the plug sticks back again to the fluidic. 3D numerical simulations with the volume of fluid method, presented here for the first time, show that the velocity of the plug can be manipulated by adjusting the backpressure. The movement of the plug results from deformation – displacement phases which are observed in the simulation and are corroborated by experimental results, recorded inside fluidics. A simplified model based on measurements of back and front contact angles under backpressure is developed

Chromosomal Aberrations in Bladder Cancer: Fresh versus Formalin Fixed Paraffin Embedded Tissue and Targeted FISH versus Wide Microarray-Based CGH Analysis

Bladder carcinogenesis is believed to follow two alternative pathways driven by the loss of chromosome 9 and the gain of chromosome 7, albeit other nonrandom copy number alterations (CNAs) were identified. However, confirmation studies are needed since many aspects of this model remain unclear and considerable heterogeneity among cases has emerged. One of the purposes of this study was to evaluate the performance of a targeted test (UroVysion assay) widely used for the detection of Transitional Cell Carcinoma (TCC) of the bladder, in two different types of material derived from the same tumor. We compared the results of UroVysion test performed on Freshly Isolated interphasic Nuclei (FIN) and on Formalin Fixed Paraffin Embedded (FFPE) tissues from 22 TCCs and we didn't find substantial differences. A second goal was to assess the concordance between array-CGH profiles and the targeted chromosomal profiles of UroVysion assay on an additional set of 10 TCCs, in order to evaluate whether UroVysion is an adequately sensitive method for the identification of selected aneuploidies and nonrandom CNAs in TCCs. Our results confirmed the importance of global genomic screening methods, that is array based CGH, to comprehensively determine the genomic profiles of large series of TCCs tumors. However, this technique has yet some limitations, such as not being able to detect low level mosaicism, or not detecting any change in the number of copies for a kind of compensatory effect due to the presence of high cellular heterogeneity. Thus, it is still advisable to use complementary techniques such as array-CGH and FISH, as the former is able to detect alterations at the genome level not excluding any chromosome, but the latter is able to maintain the individual data at the level of single cells, even if it focuses on few genomic regions