Additional file 1 of Diversity and evolution of the repetitive genomic content in Cannabis sativa

Table S1. Raw data information and repeat content for different varieties of Cannabis sativa, Humulus lupulus, Morus notabilis and Arabidopsis thaliana. Table S2. Repetitive content (percentage of the genome) in the genomes of C. sativa PK, Finola (FIN), USO31 (USO), H. lupulus (HUM) and, M. notabilis (MOR). Table S3. Repeat sequence conservation, as measured by percent sequence similarity among consensus sequences from each repeat class in each genotype, compared to the consensus repeats from the C. sativa PK genome. The missing entries are due to the absence of specific families in either of the genomes’ repeat libraries. (PDF 163 kb

scordato_BARS_metadata

Metadata for genotype estimates. File contains 533 rows corresponding to the genotype file, with individual IDs, sampling locations, GPS coordinates, and taxon classifications with corresponding color codes for plotting

SNP dataset

Data for 19,437 SNP loci and 276 individuals in allelic format used for ancestry analyses. Individuals IDs are voucher numbers (see Sampling, genomic and morphological data used for analyses.xlsx for details

scordato_BARS_genotype_estimates

Individual genotype estimates for each individual barn swallow (n=533) at each locus (n=23,251). Genotypes are continuous values derived from Bayesian estimates of genotype. They can be rounded to 0, 1, or 2 to replicated analyses that require genotype calls (see supporting information for paper

Hirundo rustica genotype probabilities

Genotype probabilities associated with the data analyzed in this study

parse_barcodes768

scripts for parsing barcode

pairwise differences - genotype and phenotype

These are the pairwise differences in genome-wide genomic divergence and phenotype between 8 populations of barn swallows

DDRAD seq protocol

Here we provide the step by step protocol for library prep