Physical Polymerization and Liquid Crystallization of RNA Oligomers

Physical Polymerization and Liquid Crystallization of RNA Oligomer

Photoinduced and Thermal Relaxation in Surface-Grafted Azobenzene-Based Monolayers: A Molecular Dynamics Simulation Study

Extensive atomistic molecular dynamics simulations have been employed to study the structure and molecular orientational relaxation of azobenzene-based monolayers grafted to a solid substrate. Systems with surface coverage of 0.6 nm²/molecule were investigated over a wide temperature range ranging from 298 K, where the mesogens show local ordering and the monolayer dynamics was found to be glassy, up to 700 K, where the azobenzene groups have a nearly isotropic orientational distribution, with a subnanosecond characteristic orientational relaxation time scale. Biased simulations that model single-molecule thermal excitation and conformational isomerization have been conducted to obtain insight into the mechanisms for photoinduced athermal fluidization and monolayer reorganization observed experimentally in this system. Our simulations clearly indicate that <i>trans</i>–<i>cis</i> conformational isomerization transitions of azobenzene units can lead to reorientation of mesogens and to the formation of a monolayer with strong macroscopic in-plane nematic order. While local heating created by excitation process can facilitate this process, thermal excitation alone is not sufficient to induce ordering in the monolayer. Instead, the work done by a molecule undergoing <i>cis–trans</i> isomerization on the cage of neighboring molecules is the key mechanism for photofluidization and orientational ordering in dMR monolayers exposed to linearly polarized light leading to relaxation dynamics that can be described in terms of higher effective temperature. The obtained simulation results are discussed in light of recent experimental data reported for these systems

Reflection Symmetry Breaking in Achiral Rod-Shaped Smectic Liquid Crystals?

The SmC phase of 4‘-octyloxyphenyl-4-octyloxybenzoate has been examined in light of recent reports that this phase is chiral. The results suggest that two varieties of chiral domains in LC cells of the phenylbenzoate are indeed formed, driven by interactions with surfaces. Application of sensitive probes for chirality and polarity in the absence of such interfacial influences failed to find any. Currently, there is no evidence that the subject SmC phase is chiral

Ferroelectric Liquid Crystals for Nonlinear Optics: Orientation of the Disperse Red 1 Chromophore along the Ferroelectric Liquid Crystal Polar Axis^†

Ferroelectric Liquid Crystals for Nonlinear Optics:  Orientation of the Disperse Red 1 Chromophore along the Ferroelectric Liquid Crystal Polar Axis†</sup

Charge Generation Measured for Fullerene–Helical Nanofilament Liquid Crystal Heterojunctions

The helical nanofilament (HNF) liquid crystal phase is an ordered architecture exhibiting interesting properties for charge transport. It is a small molecule self-assembly of stacked and twisted crystalline layers, which form alignable organic nanorods with half the surface area of the filaments consisting of aromatic sublayer edges. HNFs mixed with an electron acceptor generate an intriguing network for photoinduced electron transfer (PET). In this work, we characterize the structure of the HNF phase as processed into thin films with transmission electron microscopy (TEM) and X-ray diffraction (XRD). Additionally, we measure the flash-photolysis time-resolved microwave conductivity (TRMC) in samples where the HNF phase is fabricated into heterojunctions with the fullerenes C60 and PC60BM, prototypical electron acceptors for organic photovoltaics. Two distinct microstructures of the thin films were identified and compared for PET. A near-unity charge generation yield is observed in a bilayer of HNFs with C60. Moreover, the HNF phase is shown to be 10× better at charge generation than a lamellar structuring of the same components. Thus, the HNF phase is shown to be a good charge-generation interface

Ferroelectric Liquid Crystals for Nonlinear Optics: Orientation of the Disperse Red 1 Chromophore along the Ferroelectric Liquid Crystal Polar Axis^†

Ferroelectric Liquid Crystals for Nonlinear Optics:  Orientation of the Disperse Red 1 Chromophore along the Ferroelectric Liquid Crystal Polar Axis†</sup

Photo-Reversible Liquid Crystal Alignment using Azobenzene-Based Self-Assembled Monolayers: Comparison of the Bare Monolayer and Liquid Crystal Reorientation Dynamics

Photosensitive surfaces treated to have in-plane structural anisotropy by illumination with polarized light can be used to orient liquid crystals (LCs). Here we report a detailed study of the dynamic behavior of this process at both short and long times, comparing the ordering induced in the bare active surface with that of the LC in contact with the surface using a high-sensitivity polarimeter that enables detailed characterization of the anisotropy of the active surface. The experiments were carried out using self-assembled monolayers (SAMs) made from dimethylaminoazobenzene covalently bonded to a glass surface through a triethoxysilane terminus. This surface gives planar alignment of the liquid crystal director with an azimuthal orientation that can be controlled by the polarization of actinic light. We find a remarkable long-term collective interaction between the orientationally ordered SAM and the director field of the LC: while an azobenzene based SAM in contact with an isotropic gas or liquid relaxes to an azimuthally isotropic state in the absence of light due to thermal fluctuations, an orientationally written SAM in contact with LC in the absence of light can maintain the LC director twist permanently, that is, the SAM is capable of providing azimuthal anchoring to the LC even in the presence of a torque about the surface normal. We find that the short-time, transient LC reorientation is limited by the weak azimuthal anchoring strength of the SAM and by the LC viscosity

Photo-Reversible Liquid Crystal Alignment using Azobenzene-Based Self-Assembled Monolayers: Comparison of the Bare Monolayer and Liquid Crystal Reorientation Dynamics

Photosensitive surfaces treated to have in-plane structural anisotropy by illumination with polarized light can be used to orient liquid crystals (LCs). Here we report a detailed study of the dynamic behavior of this process at both short and long times, comparing the ordering induced in the bare active surface with that of the LC in contact with the surface using a high-sensitivity polarimeter that enables detailed characterization of the anisotropy of the active surface. The experiments were carried out using self-assembled monolayers (SAMs) made from dimethylaminoazobenzene covalently bonded to a glass surface through a triethoxysilane terminus. This surface gives planar alignment of the liquid crystal director with an azimuthal orientation that can be controlled by the polarization of actinic light. We find a remarkable long-term collective interaction between the orientationally ordered SAM and the director field of the LC: while an azobenzene based SAM in contact with an isotropic gas or liquid relaxes to an azimuthally isotropic state in the absence of light due to thermal fluctuations, an orientationally written SAM in contact with LC in the absence of light can maintain the LC director twist permanently, that is, the SAM is capable of providing azimuthal anchoring to the LC even in the presence of a torque about the surface normal. We find that the short-time, transient LC reorientation is limited by the weak azimuthal anchoring strength of the SAM and by the LC viscosity

Understanding and Manipulating Helical Nanofilaments in Binary Systems with Achiral Dopants

Here, we report the relationship between helical pitch of the helical nanofilament (HNF) phase formed by bent-core molecule NOBOW and the concentration of achiral dopants 5CB and octane, using linearly polarized resonant soft X-ray scattering (RSoXS). Utilizing theory-based simulation, which fits well with the experiments, the molecular helices in the filament were probed and the superstructure of helical 5CB directed by groove of HNFs was observed. Quantitative pitch determination with RSoXS reveals that helical pitch variation is related to 5CB concentration with no temperature dependence. Doping rodlike immiscible 5CB led to a pitch shortening of up to 30%, which was attributed to a change in interfacial tension. By shedding light not only on phase behavior of binary systems but also enabling control over pitch length, our work may benefit various applications of HNF-containing binary systems, including optical rotation devices, circularly polarized light emitters, and chirality transfer agents

Liquid Crystal Ordering and Isotropic Gelation in Solutions of Four-Base-Long DNA Oligomers

Liquid crystal ordering is reported in aqueous solutions of the oligomer 5′-ATTAp-3′ and of the oligomer 5′-GCCGp-3′. In both systems, we quantitatively interpret ordering as stemming from the chaining of molecules <i>via</i> a “running-bond” type of pairing, a self-assembly process distinct from the duplex aggregation previously reported for longer oligonucleotides. While concentrated solutions of 5′-ATTAp-3′ show only a columnar liquid crystal phase, solutions of 5′-GCCGp-3′ display a rich phase diagram, featuring a chiral nematic phase analogous to those observed in solutions of longer oligonucleotides and two unconventional phases, a columnar crystal and, at high concentration, an isotropic amorphous gel. The appearance of these phases, which can be interpreted on the basis of features of 5′-GCCGp-3′molecular structure, suggests distinctive assembly motifs specific to ultrashort oligonucleotides