Additional file 7: of Status and potential of bacterial genomics for public health practice: a scoping review

Characteristics of included studies.(XLSX 105 kb

Additional file 1: of Status and potential of bacterial genomics for public health practice: a scoping review

PRISMA checklist. Completed PRISMA checklist indicating page number in manuscript of relevant content. (PDF 409 kb

Additional file 6: of Status and potential of bacterial genomics for public health practice: a scoping review

Extraction form listing the characteristics that are extracted from the included studies. (PDF 179 kb

Additional file 2: of Status and potential of bacterial genomics for public health practice: a scoping review

Protocol. (PDF 939 kb

Additional file 5: of Status and potential of bacterial genomics for public health practice: a scoping review

PubMed search string. (PDF 176 kb

Additional file 4: of Status and potential of bacterial genomics for public health practice: a scoping review

Decision tree used during screening to distinguish between research, individual patient care, and public health practice. (PDF 275 kb

Additional file 3: of Status and potential of bacterial genomics for public health practice: a scoping review

Inclusion and exclusion criteria organized according to the Population-Concept-Context (PCC) principle, as outlined in the Joanna Briggs’ Manual for Scoping Reviews. (PDF 499 kb

Microsatellite data from parasites

This data consists genotypes obtained from Schistosoma mansoni parasites that were type at nine microsatellite markers. Each locus (e.g. L46951) is coded by 6 digits (e.g. 169175). Each allele is coded by 3 digits (e.g. 169)

R script written for some of the analyses

This is an R script that was written for some of the analysis, namely: 1) hierarchical f-statistics 2) tests for inbreeding with multilocus heterozygosity and 3) tests for family structure with relatedness estimate

Human host data

Village: location where human host lived. Host: population number that was assigned to the human host. HostIdentifier: code that is linked with that host. SamplingTime: time when parasites were sampled (e.g. Aug-09 or 09-Aug means that parasites were sampled from this host in August 2009. Age: age of the human host. EPG: eggs per gram of feces, i.e. a measure of infection intensity. CoInfectionWithShaematobium: 1 = when human host was coinfected with Schistosoma haematobium, 0 = when human host was NOT coinfected