Morphological dataset

Phenotypic measurements used to infer morphological evolutio

Concatenated alignment of exonic sequence data

Concatenated alignment (1195 loci) of exonic sequence data used to fit branch length on summary-coalescent species tre

all_combined

All sequences in fasta format. The fasta identifier includes the name of the gene and individual IDs for included specimens

Supplementary figures

Supplementary figures in order and as described in manuscrip

Alignments

All 1852 loci (contains both complete and incomplete, up to 1 species missing, alignments

ASTRAL complete dataset, ranked locus subsets

The ASTRAL input and output for the summary-coalescent species tree analysis based on the complete dataset. Locus subsets were ranked (i.e. ranked by Tree Certainty score) selected

ASTRAL incomplete dataset, ranked locus subsets

The ASTRAL input and output for the summary-coalescent species tree analysis based on the complete dataset. Locus subsets were ranked (i.e. ranked by Tree Certainty score) selected

ASTRAL incomplete dataset, random locus subsets

The ASTRAL input and output for the summary-coalescent species tree analysis based on the incomplete dataset. Locus subsets were randomly (i.e. not ranked by Tree Certainty score) selected

concatenated dataset used for RAxML analysis

Concatenated alignment of the complete dataset (1361 loci) and the inferred maximum likelihood RAxML tree (100 tree searches, 1000 bootstrap replicates

Supplementary_Table_1

Information on individuals used in the study and sequencing succes