Additional file 2 of vi-HMM: a novel HMM-based method for sequence variant identification in short-read data

Commands and settings for data simulation by wgsim and variant calling by GATK HaplotypeCaller, FreeBayes, Platypus, SAMtools, and VarScan. (PDF 77 kb

Additional file 3 of vi-HMM: a novel HMM-based method for sequence variant identification in short-read data

Performance of different variant callers using real data on chromosome 22. (PDF 83 kb

Additional file 4 of vi-HMM: a novel HMM-based method for sequence variant identification in short-read data

The alignment information by Bowtie2 and BWA-MEM at different coverage depths. (PDF 36 kb

Additional file 5 of vi-HMM: a novel HMM-based method for sequence variant identification in short-read data

Performance of vi-HMM on simulated data with homopolymers. (PDF 60 kb

Additional file 1 of vi-HMM: a novel HMM-based method for sequence variant identification in short-read data

Mapped reads in IGV viewer. (PDF 78 kb