Supplemental Material - Methyltransferase-like 3 modulates visceral hypersensitivity through regulating the nuclear export of circKcnk9 in YTHDC1-dependent manner

Supplemental Material for Methyltransferase-like 3 modulates visceral hypersensitivity through regulating the nuclear export of circKcnk9 in YTHDC1-dependent manner by Wei Lin, Yuan Liu, Yifei Zhou, Mengying Lin, Congxu Liu, Ying Tang, Bin Wu and Chun Lin in Molecular Pain</p

Supplemental Material - Methyltransferase-like 3 modulates visceral hypersensitivity through regulating the nuclear export of circKcnk9 in YTHDC1-dependent manner

Supplemental Material for Methyltransferase-like 3 modulates visceral hypersensitivity through regulating the nuclear export of circKcnk9 in YTHDC1-dependent manner by Wei Lin, Yuan Liu, Yifei Zhou, Mengying Lin, Congxu Liu, Ying Tang, Bin Wu and Chun Lin in Molecular Pain</p

Major characteristics of DGE libraries.

<p>Major characteristics of DGE libraries.</p

The colonial characteristics of <i>V. volvacea</i> stains PYd15(a, b), H1521(c, d) and PYd21(e, f).

<p>(a,c,e). strains were growth on PDA plates and images were captured after 4 d of growth. (b,d,f). strains were growth on a straw-based medium and images were captured after 15 d of cultivation.</p

Comparison of the number of CAZymes in <i>V. volvacea</i> genome with those in other fungi genomes [3].

<p>Enzymes: GH for glycoside hydrolase, GT for glycosyltransferase, PL for polysaccharide lyases, and CE for carbohydrate esterases. Species abbreviations and genome references: V. vol. for <i>Volvariella volvacea</i> (current paper), S. com. for <i>Schizophyllum commune</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Ohm1" target="_blank">[3]</a>, P. chr. for <i>Phanerochaete chrysosporium</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Martinez2" target="_blank">[30]</a>, P. pla. for <i>Postia placenta</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Martinez3" target="_blank">[31]</a>, C. cin. for <i>Coprinopsis cinerea</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Stajich1" target="_blank">[14]</a>, L. bio. for <i>Laccaria bicolor</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Martin1" target="_blank">[32]</a>, C. neo. for <i>Cryptococcus neoformans</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Loftus1" target="_blank">[33]</a>; U. may. for <i>Ustilago maydis</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Kmper1" target="_blank">[34]</a>, S.cer. for <i>Saccharomyces cerevisiae</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Goffeau1" target="_blank">[35]</a>, N.cra. for <i>Neurospora crassa</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Galagan1" target="_blank">[36]</a>, T. mel. for <i>Tuber melanosporum</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Martin2" target="_blank">[37]</a>, A.nig. for <i>Aspergillus niger</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Pel1" target="_blank">[38]</a>, P.ind. for <i>Piriformospora indica</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Zuccaro1" target="_blank">[39]</a>, P. chr. for <i>Penicillium chrysogenum</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-vandenBerg1" target="_blank">[40]</a>, and T.ree. for <i>Trichoderma reesei</i><a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Martinez1" target="_blank">[2]</a>.</p

Gene expression in three strains of <i>V. volvacea</i>.

<p>(<b>a</b>) Venn diagrams showing genes expressed in the three strains. (<b>b</b>) The histogram shows the percentage of genes that are differentially expressed in the three strains of <i>V. volvacea</i>.</p

Effects of the formation of heterokaryon on gene expression.

a<p>TMP: Tags per million.</p

Double clustering of the carbohydrate-cleaving families of 8 basidiomycete genomes.

<p><b>Top tree:</b> S. com. for <i>Schizophyllum commune</i>; V. vol. for <i>Volvariella volvacea</i>; P. chr. for <i>Phanerochaete chrysosporium</i>; C. cin. for <i>Coprinopsis cinerea</i>; P. pla. for <i>Postia placenta</i>; L. bio. for <i>Laccaria bicolor</i>; C. neo. for <i>Cryptococcus neoformans</i>; U. may. for <i>Ustilago maydis</i>. <b>Left tree:</b> the enzyme families are represented by their class (GH for glycoside hydrolase; PL for polysaccharide lyase; CE for carbohydrate esterase) and family number according to the carbohydrate-active enzyme database <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0058780#pone.0058780-Cantarel1" target="_blank">[23]</a>. <b>Right side:</b> known substrate of CAZy families. Abundance of the different enzymes within a family is represented by a colour scale from 0 (black) to >20 (red) occurrences per species.</p