python_scripts

Custom python_scripts used in the analysis, including mutual best hit analysis, pairwise_p_distance calculator, gene_average_bootstrap_value calculator, parse_gene_tree_topology. All scripts call module of Biopython. Please install Biopython before use

Supplementary File Archives

These are supplementary tables and figures related to the paper

data_nex_new

These data sets were generated from genomic and transcriptomic data of jawed vertebrate. The compressed file contains data sets generated by different filtering approach,including data filtered by data completeness,alignment quality, gene informative, evolutionary rate,resolution of gene and specific data sets designed for neoaves,eutheria,teleostei questions

tree_nex

These are trees generated from different data sets.Names were refered as corresponding data set

16taxa_species_tree

This is the species tree result

Alignment_for_RAxML

This alignment is used for ML analysis

16_taxa_raxm_&bayes_tree

This tree file contains the results from RAxML and Mrbayes. Both methods result the same topologies and same support values

Total_1435_consensus_seqs

This is the final consensus sequences produced by our approach. These data can be used for phylogenetic analysis