An assessment of twilight airglow inversion procedures using atmosphere explorer observations

The aim of this research project was to test and truth some recently developed methods for recovering thermospheric oxygen atom densities and thermospheric temperatures from ground-based observations of the 7320 A O(+)((sup 2)D - (sup 2)P) twilight air glow emission. The research plan was to use twilight observations made by the Visible Airglow Experiment (VAE) on the Atmosphere Explorer 'E' satellite as proxy ground based twilight observations. These observations were to be processed using the twilight inversion procedures, and the recovered oxygen atom densities and thermospheric temperatures were then to be examined to see how they compared with the densities and temperatures that were measured by the Open Source Mass Spectrometer and the Neutral Atmosphere Temperature Experiment on the satellite

Proposed reference models for atomic oxygen in the terrestrial atmosphere

A provisional Atomic Oxygen Reference model was derived from average monthly ozone profiles and the MSIS-86 reference model atmosphere. The concentrations are presented in tabular form for the altitude range 40 to 130 km

Lower thermospheric nitric oxide concentrations derived from WINDII observations of the green nightglow continuum at 553.1 nm

International audienceVertical profiles of nitric oxide in the altitude range 90 to 105 km are derived from 553 nm nightglow continuum measurements made with the Wind Imaging Interferometer (WINDII) on the Upper Atmosphere Research Satellite (UARS). The profiles are derived under the assumption that the continuum emission is due entirely to the NO+O air afterglow reaction. Vertical profiles of the atomic oxygen density, which are required to determine the nitric oxide concentrations, are derived from coordinated WINDII measurements of the atomic oxygen OI 557.7 nm nightglow emission. Data coverage for local solar times ranging from 20 h to 04 h, and latitudes ranging from 42°S to 42°N, is achieved by zonally averaging and binning data obtained on 18 nights during a two-month period extending from mid-November 1992 until mid-January 1993. The derived nitric oxide concentrations are significantly smaller than those obtained from rocket measurements of the airglow continuum but they do compare well with model expectations and nitric oxide densities measured using the resonance fluorescence technique on the Solar Mesosphere Explorer satellite. The near-global coverage of the WINDII observations and the similarities to the nitric oxide global morphology established from other satellite measurements strongly suggests that the NO+O reaction is the major source of the continuum near 553 nm and that there is no compelling reason to invoke additional sources of continuum emission in this immediate spectral region

OSIRIS: A Decade of Scattered Light

Into year 11 of a 2-yr mission, OSIRIS is redefining how limb-scattered sunlight can be used to probe the atmosphere, even into the upper troposphere

The Legionella effector WipB is a translocated Ser/Thr phosphatase that targets the host lysosomal nutrient sensing machinery

Legionella pneumophila infects human alveolar macrophages and is responsible for Legionnaire’s disease, a severe form of pneumonia. L. pneumophila encodes more than 300 putative effectors, which are translocated into the host cell via the Dot/Icm type IV secretion system. These effectors highjack the host’s cellular processes to allow bacterial intracellular growth and replication. Here we adopted a multidisciplinary approach to investigate WipB, a Dot/Icm effector of unknown function. The crystal structure of the N-terminal domain at 1.7 Å resolution comprising residues 25 to 344 revealed that WipB harbours a Ser/Thr phosphatase domain related to the eukaryotic phospho-protein phosphatase (PPP) family. The C-terminal domain (residues 365–524) is sufficient to pilot the effector to acidified LAMP1-positive lysosomal compartments, where WipB interacts with the v-ATPase and the associated LAMTOR1 phosphoprotein, key components of the lysosomal nutrient sensing (LYNUS) apparatus that controls the mammalian target of rapamycin (mTORC1) kinase complex at the lysosomal surface. We propose that WipB is a lysosome-targeted phosphatase that modulates cellular nutrient sensing and the control of energy metabolism during Legionella infection

On the impact of the temporal variability of the collisional quenching process on the mesospheric OH emission layer: a study based on SD-WACCM4 and SABER

Abstract. The mesospheric OH Meinel emissions are subject of many theoretical and observational studies devoted to this part of the atmosphere. Depending on the initial vibrational level of excitation the altitude of the considered OH Meinel emission is systematically shifted, which has important implications for the intercomparison of different studies considering different transition bands. Previous model studies suggest that these vertical shifts are essentially caused by the process of collisional quenching with atomic oxygen. Following this hypothesis, a recent study found experimental evidence of a coherent seasonality at tropical latitudes between vertical shifts of different OH Meinel bands and changes in atomic oxygen concentrations. Despite the consistent finding of the above mentioned hypothesis, it cannot be excluded that the actual temporal variability of the vertical shifts between different OH Meinel bands may in addition be controlled or even dominated by other processes. It remains an open question whether the observed temporal evolution is indeed mainly controlled by the modulation of the collisional quenching process with atomic oxygen. By means of a sensitivity study which employs a quenching model to simulations made with the SD-WACCM4 chemistry climate model, we aim at assessing this question. From this study we find that the observed seasonality of vertical OH Meinel shifts is only partially controlled by temporal changes in atomic oxygen concentrations, while molecular oxygen has another noticeable impact on the vertical OH Meinel shifts. This in particular becomes evident for the diurnal variability of vertical OH Meinel shifts, which reveal only a poor correlation with the atomic oxygen species. Furthermore, changes in the H + O3 source gases provide another mechanism that can potentially affect the diurnal variability in addition. By comparison with limb radiance observations from the SABER/TIMED satellite this provides an explanation for the less evident diurnal response between changes in O concentrations and vertical OH Meinel shifts. On the other hand, at seasonal timescales the coherency between both quantities is again evident in SABER/TIMED but less pronounced compared to our model simulations. </jats:p

Monitoring the EU protected Geomalacus maculosus (Kerry Slug): what are the factors affecting catch returns in open and forested habitats?

Geomalacus maculosus is a slug species protected under EU law with a distribution limited to the west of Ireland and north-west Iberia. The species, originally thought to be limited within Ireland to deciduous woodland and peatland, has been found in a number of commercial conifer plantations since 2010. While forest managers are now required to incorporate the protection of the species where it is present, no clear species monitoring protocols are currently available. This study examines the efficacy of De Sangosse refuge traps across three habitats frequently associated with commercial forest plantations in Ireland and compares them with hand searching, a commonly used method for slug monitoring. Catch data during different seasons and under different weather conditions are also presented. Results indicate that autumn is the optimal time for sampling G. maculosus but avoiding extremes of hot or cold weather. While refuge traps placed at 1.5 m on trees in mature conifer plantations and directly on exposed rock in blanket peatlands result in significantly greater catches, hand searching is the most successful approach for clear-fell areas. Hand searches in clear-fell preceded by rain are likely to result in greater numbers caught. The results of this study form, for the first time, the basis for G. maculosus monitoring guidelines for forestry managers. © 2016, The Ecological Society of Japa

The Roles of Vertical Advection and Eddy Diffusion in the Equatorial Mesospheric Semi-Annual Oscillation (MSAO)

Observations of the mesospheric semi-annual oscillation (MSAO) in the equatorial region have been reported dating back several decades. Seasonal variations in both species densities and airglow emissions are well documented. The extensive observations available offer an excellent case study for comparison with model simulations. A broad range of MSAO measurements is summarised with emphasis on the 80-100 km region. The objective here is not to address directly the complicated driving forces of the MSAO, but rather to employ a combination of observations and model simulations to estimate the limits of some of the underlying dynamical processes. Photochemical model simulations are included for near-equinox and near-solstice conditions, the two times with notable differences in the observed MSAO parameters. Diurnal tides are incorporated in the model to facilitate comparisons of observations made at different local times. The roles of water vapour as the driver species and ozone as the response species are examined to test for consistency between the model results and observations. The simulations suggest the interactions between vertical eddy diffusion and background vertical advection play a significant role in the MSAO phenomenon. Further, the simulations imply there are rigid limits on vertical advection rates and eddy diffusion rates. For August at the Equator, 90 km altitude, the derived eddy diffusion rate is approximately 1 x 106 cm2 s-1 and the vertical advection is upwards at 0.8 cm s-1. For April the corresponding values are 4 x 105 cm2 s-1 and 0.1 cm s-1. These results from the current 1-D model simulations will need to be verified by a full 3-D simulation. Exactly how vertical advection and eddy diffusion are related to gravity wave momentum as discussed by Dunkerton (1982) three decades ago remains to be addressed

Spatial transcriptomics identifies spatially dysregulated expression of <i>GRM3</i> and <i>USP47</i> in amyotrophic lateral sclerosis

Research Funding Medical Research Council. Grant Number: MR/L016400/1 Biogen Academy of Medical Sciences. Grant Number: 210JMG 3102 R45620 MND Scotland Engineering and Physical Sciences Research CouncilPeer reviewedPublisher PD