10 research outputs found
Keto–Enol Tautomerism of Phenindione and Its Derivatives: An NMR and Density Functional Theory (DFT) Reinvestigation
Keto–enol
tautomerism of phenindione (2-phenyl-1,3-indandione)
and of its 4-phenyl-substituted derivatives was reinvestigated by
NMR, supported by density functional theory (DFT) quantum-mechanical
calculations. The calculated data quantitatively confirmed the stabilization
in DMSO solution of the enol form by a strong hydrogen bond. The symmetry
of the NMR spectra of the enol forms was explained by a fast proton
transfer between carbonyl oxygen atoms, which is facilitated by the
formation of a strong ionic complex of the enol form and an anion.
It was shown that keto–enol tautomerization also proceeds with
the participation of a similar complex between an anion and the diketo
form of 2-phenyl-1,3-indandione
C<sub>Ar</sub>–H···O Hydrogen Bonds in Substituted Isobenzofuranone Derivatives: Geometric, Topological, and NMR Characterization
Substituted isobenzofuranone derivatives <b>1a</b>–<b>3a</b> and bindone <b>4</b> are characterized
by the presence
of an intramolecular C<sub>Ar</sub>–H···O hydrogen
bond in the crystal (X-ray), solution (<sup>1</sup>H NMR and specific
and nonspecific IEF-PCM solvation model combined with MP2 and B3LYP
methods), and gas (MP2 and B3LYP) phases. According to geometric and
AIM criteria, the C<sub>Ar</sub>–H···O interaction
weakens in <b>1a</b>–<b>3a</b> (independent of
substituent nature) and in <b>4</b> with the change in media
in the following order: gas phase > CHCl<sub>3</sub> solution >
DMSO
solution > crystal. The maximum value of hydrogen bond energy is
4.6
kcal/mol for <b>1a</b>–<b>3a</b> and 5.6 kcal/mol
for <b>4</b>. Both in crystals and in solutions, hydrogen bond
strength increases in the order <b>1a</b> < <b>2a</b> < <b>3a</b> with the rising electronegativity of the ring
substituents (H < OMe < Cl). The best method for calculating <sup>1</sup>H NMR chemical shifts (δ<sup>calcd</sup> – δ<sup>expl</sup> < 0.7 ppm) of hydrogen bonded and nonbonded protons
in <b>1a</b>–<b>3a</b> and <b>1b</b>–<b>3b</b> (isomers without hydrogen bonds) is the GIAO method at
the B3LYP level with the 6-31G** and 6-311G** basis sets. For the
C–H moiety involved in the hydrogen bond, the increase of the
spin–spin coupling constant <sup>1</sup><i>J</i>(<sup>13</sup>C–<sup>1</sup>H) by about 7.5 Hz is in good agreement
with calculations for C–H bond shortening and for blue shifts
of C–H stretching vibrations (by 55–75 cm<sup>–1</sup>)
C<sub>Ar</sub>–H···O Hydrogen Bonds in Substituted Isobenzofuranone Derivatives: Geometric, Topological, and NMR Characterization
Substituted isobenzofuranone derivatives <b>1a</b>–<b>3a</b> and bindone <b>4</b> are characterized
by the presence
of an intramolecular C<sub>Ar</sub>–H···O hydrogen
bond in the crystal (X-ray), solution (<sup>1</sup>H NMR and specific
and nonspecific IEF-PCM solvation model combined with MP2 and B3LYP
methods), and gas (MP2 and B3LYP) phases. According to geometric and
AIM criteria, the C<sub>Ar</sub>–H···O interaction
weakens in <b>1a</b>–<b>3a</b> (independent of
substituent nature) and in <b>4</b> with the change in media
in the following order: gas phase > CHCl<sub>3</sub> solution >
DMSO
solution > crystal. The maximum value of hydrogen bond energy is
4.6
kcal/mol for <b>1a</b>–<b>3a</b> and 5.6 kcal/mol
for <b>4</b>. Both in crystals and in solutions, hydrogen bond
strength increases in the order <b>1a</b> < <b>2a</b> < <b>3a</b> with the rising electronegativity of the ring
substituents (H < OMe < Cl). The best method for calculating <sup>1</sup>H NMR chemical shifts (δ<sup>calcd</sup> – δ<sup>expl</sup> < 0.7 ppm) of hydrogen bonded and nonbonded protons
in <b>1a</b>–<b>3a</b> and <b>1b</b>–<b>3b</b> (isomers without hydrogen bonds) is the GIAO method at
the B3LYP level with the 6-31G** and 6-311G** basis sets. For the
C–H moiety involved in the hydrogen bond, the increase of the
spin–spin coupling constant <sup>1</sup><i>J</i>(<sup>13</sup>C–<sup>1</sup>H) by about 7.5 Hz is in good agreement
with calculations for C–H bond shortening and for blue shifts
of C–H stretching vibrations (by 55–75 cm<sup>–1</sup>)
C<sub>Ar</sub>–H···O Hydrogen Bonds in Substituted Isobenzofuranone Derivatives: Geometric, Topological, and NMR Characterization
Substituted isobenzofuranone derivatives <b>1a</b>–<b>3a</b> and bindone <b>4</b> are characterized
by the presence
of an intramolecular C<sub>Ar</sub>–H···O hydrogen
bond in the crystal (X-ray), solution (<sup>1</sup>H NMR and specific
and nonspecific IEF-PCM solvation model combined with MP2 and B3LYP
methods), and gas (MP2 and B3LYP) phases. According to geometric and
AIM criteria, the C<sub>Ar</sub>–H···O interaction
weakens in <b>1a</b>–<b>3a</b> (independent of
substituent nature) and in <b>4</b> with the change in media
in the following order: gas phase > CHCl<sub>3</sub> solution >
DMSO
solution > crystal. The maximum value of hydrogen bond energy is
4.6
kcal/mol for <b>1a</b>–<b>3a</b> and 5.6 kcal/mol
for <b>4</b>. Both in crystals and in solutions, hydrogen bond
strength increases in the order <b>1a</b> < <b>2a</b> < <b>3a</b> with the rising electronegativity of the ring
substituents (H < OMe < Cl). The best method for calculating <sup>1</sup>H NMR chemical shifts (δ<sup>calcd</sup> – δ<sup>expl</sup> < 0.7 ppm) of hydrogen bonded and nonbonded protons
in <b>1a</b>–<b>3a</b> and <b>1b</b>–<b>3b</b> (isomers without hydrogen bonds) is the GIAO method at
the B3LYP level with the 6-31G** and 6-311G** basis sets. For the
C–H moiety involved in the hydrogen bond, the increase of the
spin–spin coupling constant <sup>1</sup><i>J</i>(<sup>13</sup>C–<sup>1</sup>H) by about 7.5 Hz is in good agreement
with calculations for C–H bond shortening and for blue shifts
of C–H stretching vibrations (by 55–75 cm<sup>–1</sup>)
Hydrogen Bonding in Bis(6-amino-1,3-dimethyluracil-5-yl)-methane Derivatives: Dynamic NMR and DFT Evaluation
Three bis(6-amino-1,3-dimethyluracil-5-yl)-methane
derivatives
were studied experimentally by variable-temperature <sup>1</sup>H
NMR in polar aprotic solutions (CD<sub>2</sub>Cl<sub>2</sub>, C<sub>5</sub>D<sub>5</sub>N, C<sub>2</sub>D<sub>2</sub>Cl<sub>4</sub>)
and computationally by DFT. The unusual for diarylmethanes coplanar
conformation of dimethyluracil rings of each molecule is held by a
pair of unequal intramolecular N–H···O hydrogen
bonds. We show the presence of two dynamic processes involving breakage/formation
of these bonds. First, it is two independent NH<sub>2</sub> group
rotations, each coupled to nitrogen inversion. Second, it is uracil
ring rotations (ring flips). The thermodynamic parameters (Δ<i>H</i><sup>‡</sup>, Δ<i>S</i><sup>‡</sup>, and Δ<i>G</i><sup>‡</sup>) of both processes
were estimated by the full line shape analysis of NMR signals and
also by DFT calculations. We demonstrate that, though the ring flips
exchange pairs of NH protons, the two processes are not coupled: during
the ring flip NH<sub>2</sub> groups do not rotate, and during the
NH<sub>2</sub> rotation the rings do not necessarily rotate. Unlike
in many other diarylmethanes, the ring flips in the studied compounds
are happening stepwise; i.e., the configuration when both rings are
“in flight” at the same time is energetically unfavorable
(small degree of “cog wheel effect”). The signs of the
Δ<i>S</i><sup>‡</sup> values indicate that
the molecular flexibility increases during the NH<sub>2</sub> rotations,
but decreases during the ring flips
2<i>H</i>‑Indazole Tautomers Stabilized by Intra- and Intermolecular Hydrogen Bonds
2-[(2H-Indazol-3-yl)methylene]-1H-indene-1,3(2H)-dione 6 and (E)-2-[(2H-indazol-3-yl)methylene]-2,3-dihydro-1H-inden-1-one 7 have been synthesized. In the
crystal, the NH hydrogen atom of 6 is disordered between
the N(1) and N(2) atoms with the population ratio of 0.69:0.31. Molecule 7 crystallizes in two tautomeric polymorphs: 7-1H tautomer (yellow) and 7-2H tautomer (red). Both 6 and 7 form centrosymmetric dimers in the crystal with the monomeric units
linked by CO···H···N bifurcated
hydrogen bonds in 6 and N–H···N
hydrogen bonds in 7. According to 1H and 13C NMR data, in DMSO-d6 solution,
the 6-1H tautomer predominates, whereas
in less polar CDCl3 or CD2Cl2, the 6-2H tautomer is stabilized by a strong N–H···OC
intramolecular hydrogen bond. Compound 7 in dimethyl
sulfoxide (DMSO) or ethanol solutions exists in the form of 7-1H and 7-2H tautomers. On the example of the 7-2H tautomer, it was shown for the first time that the 2H tautomers of 3-substituted indazoles can be stabilized by an intermolecular
hydrogen bond and may remain in aprotic solvents almost indefinitely.
However, in the open air or in water, fast 2H →
1H tautomerization occurs. As follows from density
functional theory calculations, the high stability of the 2H form in solution is due to the formation of centrosymmetric
dimers, which are more stable than the corresponding dimers of the
1H tautomer
2<i>H</i>‑Indazole Tautomers Stabilized by Intra- and Intermolecular Hydrogen Bonds
2-[(2H-Indazol-3-yl)methylene]-1H-indene-1,3(2H)-dione 6 and (E)-2-[(2H-indazol-3-yl)methylene]-2,3-dihydro-1H-inden-1-one 7 have been synthesized. In the
crystal, the NH hydrogen atom of 6 is disordered between
the N(1) and N(2) atoms with the population ratio of 0.69:0.31. Molecule 7 crystallizes in two tautomeric polymorphs: 7-1H tautomer (yellow) and 7-2H tautomer (red). Both 6 and 7 form centrosymmetric dimers in the crystal with the monomeric units
linked by CO···H···N bifurcated
hydrogen bonds in 6 and N–H···N
hydrogen bonds in 7. According to 1H and 13C NMR data, in DMSO-d6 solution,
the 6-1H tautomer predominates, whereas
in less polar CDCl3 or CD2Cl2, the 6-2H tautomer is stabilized by a strong N–H···OC
intramolecular hydrogen bond. Compound 7 in dimethyl
sulfoxide (DMSO) or ethanol solutions exists in the form of 7-1H and 7-2H tautomers. On the example of the 7-2H tautomer, it was shown for the first time that the 2H tautomers of 3-substituted indazoles can be stabilized by an intermolecular
hydrogen bond and may remain in aprotic solvents almost indefinitely.
However, in the open air or in water, fast 2H →
1H tautomerization occurs. As follows from density
functional theory calculations, the high stability of the 2H form in solution is due to the formation of centrosymmetric
dimers, which are more stable than the corresponding dimers of the
1H tautomer
2<i>H</i>‑Indazole Tautomers Stabilized by Intra- and Intermolecular Hydrogen Bonds
2-[(2H-Indazol-3-yl)methylene]-1H-indene-1,3(2H)-dione 6 and (E)-2-[(2H-indazol-3-yl)methylene]-2,3-dihydro-1H-inden-1-one 7 have been synthesized. In the
crystal, the NH hydrogen atom of 6 is disordered between
the N(1) and N(2) atoms with the population ratio of 0.69:0.31. Molecule 7 crystallizes in two tautomeric polymorphs: 7-1H tautomer (yellow) and 7-2H tautomer (red). Both 6 and 7 form centrosymmetric dimers in the crystal with the monomeric units
linked by CO···H···N bifurcated
hydrogen bonds in 6 and N–H···N
hydrogen bonds in 7. According to 1H and 13C NMR data, in DMSO-d6 solution,
the 6-1H tautomer predominates, whereas
in less polar CDCl3 or CD2Cl2, the 6-2H tautomer is stabilized by a strong N–H···OC
intramolecular hydrogen bond. Compound 7 in dimethyl
sulfoxide (DMSO) or ethanol solutions exists in the form of 7-1H and 7-2H tautomers. On the example of the 7-2H tautomer, it was shown for the first time that the 2H tautomers of 3-substituted indazoles can be stabilized by an intermolecular
hydrogen bond and may remain in aprotic solvents almost indefinitely.
However, in the open air or in water, fast 2H →
1H tautomerization occurs. As follows from density
functional theory calculations, the high stability of the 2H form in solution is due to the formation of centrosymmetric
dimers, which are more stable than the corresponding dimers of the
1H tautomer
Intra- and Intermolecular Hydrogen Bonds in Pyrrolylindandione Derivatives and Their Interaction with Fluoride and Acetate: Possible Anion Sensing Properties
The
series of push–pull compounds containing the pyrrole
ring as a donor and the 1,3-indandione derived moieties as the acceptor
unit were synthesized, and strong intramolecular hydrogen bonding
in their molecules was studied. In the presence of fluoride and acetate
anions their solutions undergo color changes. It was shown by NMR,
UV–vis, and quantum chemical calculations including AIM analysis
that all these compounds undergo solvent-assisted rupture of the intramolecular
hydrogen bond followed by the formation of a strong intermolecular
hydrogen bond with fluoride and acetate anions which finally abstract
a proton from the pyrrole ring. The insensitivity of the studied compounds
to other anions (Cl, Br, HSO<sub>4</sub>, PF<sub>6</sub>) is consequence
of the instability of the corresponding hydrogen-bonded complexes
