Population simulations

<p>This script runs with simuPoP, an individual-based forward-time population genetics simulation environment.</p> <p>Please visit simuPOP website for more information about simuPOP : http://simupop.sourceforge.net/.</p> <p> </p> <p>Installation details : </p> <p>This script runs under Python version 2. You should use Python version 2 and simuPOP for python v. 2 :<br>- python-2.7.amd64.exe<br>- simuPOP-1.1.6.win-amd64-py2.7.exe</p> <p>If you get the error message : "ImportError: DLL Load failed: The application failed to start because its side-by-side configuration is incorrect.", you should install "Microsoft Visual C++ 2008 Service Pack 1 Redistributable Package MFC Security Update" : vcredist_x64.exe<br>(http://www.microsoft.com/fr-FR/download/details.aspx?id=26368)</p> <p>Please visit the download page of simuPoP Website for more information about how to install simuPOP : http://simupop.sourceforge.net/Main/Download </p

HBM : Hierarchical GST partitioning - Results Example (BUGS encoded)

<p>Results Example</p

GST inference - Data Example (BUGS encoded)

<p>Example data file</p

HBM : Hierarchical GST partitioning - Code (BUGS encoded)

<p>This scripts is encoded in BUGS and runs with OpenBUGS or WinBUGS.</p> <p>Example data files and results are attached.<br>Please consult OpenBUGS documentation for complementary information about Bayesian modelling, data formatting and how to run models in OpenBUGS (http://www.openbugs.net/w/FrontPage).</p

Bayesian GST inference (BUGS encoded)

<p>Bayesian inference of pairwise GSTs</p

HBM : Hierarchical GST partitioning and Outlier detection (BUGS encoded)

<p>HBM : Bayesian Hierarchical GST partitioning and Outlier detection</p

GST inference : Code (BUGS encoded)

<p>This scripts is encoded in BUGS and runs with OpenBUGS or WinBUGS.</p> <p>Example data files and results are attached.<br>Please consult OpenBUGS documentation for complementary information about Bayesian modelling, data formatting and how to run models in OpenBUGS (http://www.openbugs.net/w/FrontPage).</p

GST inference - Results Example (BUGS encoded)

<p>Results example</p

DATA : Abies data

<p>BlastX and  functional annotation (sheet 1), SNPs design (sheet 2) and SNPs Genotyping* (sheet 3).</p> <p>*<em>Abies alba</em> and<em> A. cephalonica</em> populations (10 altitudinal gradients accross Europe from French Pyrennées to Greece) / 273 SNPs</p