Eperua_falcata_AFLPs_MarkerBins

The file describes the AFLPs binset: the restriction enzyme used, the dye color for genotyping, and the location of the AFLPs bins

Results of the landscape-scale Bayesian model (values are provided in Table 3).

<p>Points show the inferred parameters with their 95% posterior probability: μ is the global mean, θ ₁ represents the effect of site, θ₂ is the slope of the relation between the geographical and genetic distance within sites in a two-dimensional x,y-plane, θ₃ is the slope of the relation between the geographical and genetic distance within sites according to an elevation gradient, θ₄ describes the effect of drought severity, θ₅ describes the effect of waterlogging frequency and θ₆ describes the effect of soil type.</p

Environmental conditions in the study sites and local habitats: soil humidity (%), soil temperature (°C) and canopy opening (%).

<p>Complete data are provided in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0121394#pone.0121394.s009" target="_blank">S1 Table</a>.</p

Results of the Bayesian outlier search under a 10% expected FRD.

<p>Results of the Bayesian outlier search under a 10% expected FRD.</p

Geographic and topographic situation of the study sites.

<p>Colored dots: trees sampled for genotyping (triangles: hilltop; squares: bottomland).</p

Results of the coalescent outlier search under the hierarchical island model.

<p>Blue dashed line: 95% neutral envelop; red dashed line: 99% neutral envelop. Only loci above the neutral envelop and retained after multiple corrections (FDR = 10%) are shown.</p

Band presence frequency (allele ‘1’) in each local habitats (‘B’: bottomland, ‘H’: hilltop) and each study site (circles: Laussat, squares: Régina).

<p>The tables below show the result of X² tests on AFLP band frequency ('*': significant; ‘-’: non-significant or missing).</p

Parameters inferred by the landscape Bayesian model with their respective posterior probabilities (mean, standard deviation, median, and 95% credible interval): μ (global mean), θ₁ (site effect), θ₂ (slope of the relation between geographical and genetic distance within sites according to a 2D x,y-plane), θ₃ (slope of the relation between the geographical and genetic distance within sites according to an elevation gradient), θ₄ (drought severity effect), θ₅ (waterlogging frequency effect), and θ₆ (soil type effect).

<p>Parameters inferred by the landscape Bayesian model with their respective posterior probabilities (mean, standard deviation, median, and 95% credible interval): μ (global mean), θ₁ (site effect), θ₂ (slope of the relation between geographical and genetic distance within sites according to a 2D x,y-plane), θ₃ (slope of the relation between the geographical and genetic distance within sites according to an elevation gradient), θ₄ (drought severity effect), θ₅ (waterlogging frequency effect), and θ₆ (soil type effect).</p

Top: Number of tree pairs in each distance class.

<p>Bottom: Intra-site spatial genetic structure (SGS) analysis based on all AFLP markers.</p

Eperua_falcata_AFLPs_Data

The file contains a description of the sampled trees (tree number, location) and the AFLPs data (binary