2 research outputs found
mBIO-Llauger-et-al-2023-movieS2
Movie S2. Animation of the reconstructed model of the P9-1 decamer and its MD simulation.
The model is colored according to its secondary structure elements as in Fig. 3A. At the beginning of the movie, only one dimer is shown and the other four appear sequentially to illustrate the decamer construction. Then, the MD animation starts, and residues that were fixed in space as found experimentally are colored in light gray using Connolly surface. The structure is zoomed-in to highlight the mobility at the inner pore of the complex. Then, a parallel plane to the pore is presented (three out of the five dimers are shown in this last segment). The MD animation displays the last 2 μs of a 3 μs simulation. </p
mBIO-Llauger-et-al-2023-movieS3
Movie S3. Animation of the reconstructed model of the P9-1 dodecamer and its MD simulation.
The model is colored according to its secondary structure elements as in Fig. 3A. At the beginning of the movie, only one dimer is shown, and the other five appear sequentially to illustrate the dodecamer construction. Then, the MD animation starts, and residues that were fixed in space as found experimentally are colored in light gray using Connolly surface. The structure is zoomed-in to highlight the mobility at the inner pore of the complex. Then, a parallel plane to the pore is presented (three out of the six dimers are shown in this last segment). The MD animation displays a 2 μs simulation. </p