Two-stage Turing model for generating pigment patterns on the leopard and the jaguar

Based on the results of phylogenetic analysis, which showed that flecks are the primitive pattern of the felid family and all other patterns including rosettes and blotches develop from it, we construct a Turing reaction-diffusion model which generates spot patterns initially. Starting from this spotted pattern, we successfully generate patterns of adult leopards and jaguars by tuning parameters of the model in the subsequent phase of patterning

Oscillatory Turing Patterns in a Simple Reaction-Diffusion System

Turing suggested that, under certain conditions, chemicals can react and diffuse in such a way as to produce steady-state inhomogeneous spatial patterns of chemical concentrations. We consider a simple two-variable reaction-diffusion system and find there is a spatio-temporally oscillating solution (STOS) in parameter regions where linear analysis predicts a pure Turing instability and no Hopf instability. We compute the boundary of the STOS and spatially non-uniform solution (SSNS) regions and investigate what features control its behavior

Low thrust viscous nozzle flow fields prediction

A Navier-Stokes code was developed for low thrust viscous nozzle flow field prediction. An implicit finite volume in an arbitrary curvilinear coordinate system lower-upper (LU) scheme is used to solve the governing Navier-Stokes equations and species transportation equations. Sample calculations of carbon dioxide nozzle flow are presented to verify the validity and efficiency of this code. The computer results are in reasonable agreement with the experimental data

Double noding technique for mixed mode crack propagation studies

A simple dynamic finite element algorithm for analyzing a propagating mixed mode crack tip is presented. A double noding technique, which can be easily incorporated into existing dynamic finite element codes, is used together with a corrected J integral to extract modes I and II dynamic stress intensity factors of a propagating crack. The utility of the procedure is demonstrated by analyzing test problems involving a mode I central crack propagating in a plate subjected to uniaxial tension, a mixed mode I and II stationary, slanted central crack in a plate subjected to uniaxial impact loading, and a mixed mode I and II extending, slanted single edge crack in a plate subjected to uniaxial tension

Distance-two labelings of digraphs

For positive integers $j\ge k$, an $L(j,k)$-labeling of a digraph $D$ is a function $f$ from $V(D)$ into the set of nonnegative integers such that $|f(x)-f(y)|\ge j$ if $x$ is adjacent to $y$ in $D$ and $|f(x)-f(y)|\ge k$ if $x$ is of distant two to $y$ in $D$. Elements of the image of $f$ are called labels. The $L(j,k)$-labeling problem is to determine the $\vec{\lambda}_{j,k}$-number $\vec{\lambda}_{j,k}(D)$ of a digraph $D$, which is the minimum of the maximum label used in an $L(j,k)$-labeling of $D$. This paper studies $\vec{\lambda}_{j,k}$- numbers of digraphs. In particular, we determine $\vec{\lambda}_{j,k}$- numbers of digraphs whose longest dipath is of length at most 2, and $\vec{\lambda}_{j,k}$-numbers of ditrees having dipaths of length 4. We also give bounds for $\vec{\lambda}_{j,k}$-numbers of bipartite digraphs whose longest dipath is of length 3. Finally, we present a linear-time algorithm for determining $\vec{\lambda}_{j,1}$-numbers of ditrees whose longest dipath is of length 3.Comment: 12 pages; presented in SIAM Coference on Discrete Mathematics, June 13-16, 2004, Loews Vanderbilt Plaza Hotel, Nashville, TN, US

Numerical simulation of advection fog formation on multi-disperse aerosols due to combustion-related pollutants

The effects of multi-disperse distribution of the aerosol population are presented. Single component and multi-component aerosol species on the condensation/nucleation processes which affect the reduction in visibility are described. The aerosol population with a high particle concentration provided more favorable conditions for the formation of a denser fog than the aerosol population with a greater particle size distribution when the value of the mass concentration of the aerosols was kept constant. The results were used as numerical predictions of fog formation. Two dimensional observations in horizontal and vertical coordinates, together with time-dependent measurements were needed as initial values for the following physical parameters: (1)wind profiles; (2) temperature profiles; (3) humidity profiles; (4) mass concentration of aerosol particles; (5) particle size distribution of aerosols; and (6) chemical composition of aerosols. Formation and dissipation of advection fog, thus, can be forecasted numerically by introducing initial values obtained from the observations

Hygroscopic chemicals and the formation of advection warm fog: A numerical simulation

The formation of advection fog is closely associated with the characteristics of the aerosol particles, including the chemical composition, mass of the nuclei, particle size, and concentration. Both macrophysical and microphysical processes are considered. In the macrophysical model, the evolution of wind components, water vapor content, liquid water content and potential temperature under the influences of vertical turbulent diffusion, turbulent momentum, and turbulent energy transfers are taken into account. In the microphysical model, the supersaturation effect is incorporated with the surface tension and hygroscopic material solution

Differential DNA accessibility to polymerase enables 30-minute phenotypic β-lactam antibiotic susceptibility testing of carbapenem-resistant Enterobacteriaceae

The rise in carbapenem-resistant Enterobacteriaceae (CRE) infections has created a global health emergency, underlining the critical need to develop faster diagnostics to treat swiftly and correctly. Although rapid pathogen-identification (ID) tests are being developed, gold-standard antibiotic susceptibility testing (AST) remains unacceptably slow (1–2 d), and innovative approaches for rapid phenotypic ASTs for CREs are urgently needed. Motivated by this need, in this manuscript we tested the hypothesis that upon treatment with β-lactam antibiotics, susceptible Enterobacteriaceae isolates would become sufficiently permeabilized, making some of their DNA accessible to added polymerase and primers. Further, we hypothesized that this accessible DNA would be detectable directly by isothermal amplification methods that do not fully lyse bacterial cells. We build on these results to develop the polymerase-accessibility AST (pol-aAST), a new phenotypic approach for β-lactams, the major antibiotic class for gram-negative infections. We test isolates of the 3 causative pathogens of CRE infections using ceftriaxone (CRO), ertapenem (ETP), and meropenem (MEM) and demonstrate agreement with gold-standard AST. Importantly, pol-aAST correctly categorized resistant isolates that are undetectable by current genotypic methods (negative for β-lactamase genes or lacking predictive genotypes). We also test contrived and clinical urine samples. We show that the pol-aAST can be performed in 30 min sample-to-answer using contrived urine samples and has the potential to be performed directly on clinical urine specimens