Hierarchical clustering of the 42 identified CCRTFs accoring to their AC score profiles

<p><b>Copyright information:</b></p><p>Taken from "Systematic identification of cell cycle regulated transcription factors from microarray time series data"</p><p>http://www.biomedcentral.com/1471-2164/9/116</p><p>BMC Genomics 2008;9():116-116.</p><p>Published online 3 Mar 2008</p><p>PMCID:PMC2315658.</p><p></p

Inferred AC score profiles (A) and mRNA expression profiles (B) of 4 known CCRTFs

<p><b>Copyright information:</b></p><p>Taken from "Systematic identification of cell cycle regulated transcription factors from microarray time series data"</p><p>http://www.biomedcentral.com/1471-2164/9/116</p><p>BMC Genomics 2008;9():116-116.</p><p>Published online 3 Mar 2008</p><p>PMCID:PMC2315658.</p><p></p

AC score profiles for 8 cell cycle associated motifs with known TFs identified by our analysis

<p><b>Copyright information:</b></p><p>Taken from "Systematic identification of cell cycle regulated transcription factors from microarray time series data"</p><p>http://www.biomedcentral.com/1471-2164/9/116</p><p>BMC Genomics 2008;9():116-116.</p><p>Published online 3 Mar 2008</p><p>PMCID:PMC2315658.</p><p></p

Systematic identification of cell cycle regulated transcription factors from microarray time series data-0

Espectively. The Fisher's G-tests are applied to each of the 203 TF AC score profiles and expression profiles. Distributions of the resulting p-values are shown in (C) and (D), respectively.<p><b>Copyright information:</b></p><p>Taken from "Systematic identification of cell cycle regulated transcription factors from microarray time series data"</p><p>http://www.biomedcentral.com/1471-2164/9/116</p><p>BMC Genomics 2008;9():116-116.</p><p>Published online 3 Mar 2008</p><p>PMCID:PMC2315658.</p><p></p

Systematic identification of cell cycle regulated transcription factors from microarray time series data-6

Espectively. The Fisher's G-tests are applied to each of the 203 TF AC score profiles and expression profiles. Distributions of the resulting p-values are shown in (C) and (D), respectively.<p><b>Copyright information:</b></p><p>Taken from "Systematic identification of cell cycle regulated transcription factors from microarray time series data"</p><p>http://www.biomedcentral.com/1471-2164/9/116</p><p>BMC Genomics 2008;9():116-116.</p><p>Published online 3 Mar 2008</p><p>PMCID:PMC2315658.</p><p></p

AC score profiles of four TFs which may be perturbed in activity by -factor synchronizing treatment

<p><b>Copyright information:</b></p><p>Taken from "Systematic identification of cell cycle regulated transcription factors from microarray time series data"</p><p>http://www.biomedcentral.com/1471-2164/9/116</p><p>BMC Genomics 2008;9():116-116.</p><p>Published online 3 Mar 2008</p><p>PMCID:PMC2315658.</p><p></p

A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays-4

E invariant-set normalization. The first reference array, , has been perturbed by adding noise. It shows a quite different distribution than others.<p><b>Copyright information:</b></p><p>Taken from "A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays"</p><p>http://www.biomedcentral.com/1471-2105/9/194</p><p>BMC Bioinformatics 2008;9():194-194.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375129.</p><p></p

A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays-0

Ing of summarization. Here, we only illustrate the cross strategy for the reference and target selection.<p><b>Copyright information:</b></p><p>Taken from "A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays"</p><p>http://www.biomedcentral.com/1471-2105/9/194</p><p>BMC Bioinformatics 2008;9():194-194.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375129.</p><p></p

A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays-2

Ent of non-spike-in genes. The PTR method gives the smallest variation for all three normalization algorithms.<p><b>Copyright information:</b></p><p>Taken from "A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays"</p><p>http://www.biomedcentral.com/1471-2105/9/194</p><p>BMC Bioinformatics 2008;9():194-194.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375129.</p><p></p

A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays-5

Ference" across all the probe-sets. It is computed from the residual assessment after the PTR method with the invariant-set normalization on the data set "Expt-3-4".<p><b>Copyright information:</b></p><p>Taken from "A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays"</p><p>http://www.biomedcentral.com/1471-2105/9/194</p><p>BMC Bioinformatics 2008;9():194-194.</p><p>Published online 14 Apr 2008</p><p>PMCID:PMC2375129.</p><p></p