Tree from bayesian analyses of COI and 28S data combined

Tree file for bayesian analyses of COI and 28S data combined. Matrix shows included OTUs (one specimen representing each OTU in analysis). Analyzed in MrBayes Version 3.2, implementing evolutionary models (GTR+G+I) as suggested by MrModelTest

R scripts and input files

File contents: 1: Two BEAST input files for phylogenetic reconstructions; 2: input file, settings file and sample prob. file for BAMM analysis; 3: R script for downloading COI sequences from genbank; 4: R script for processing the 305 species tree (data extraction and pruning to genus tree); 5: R script for prepping 602 spp tree for BAMM and analyses of BAMM output files; 6: R scripts for SLOUCH analyse