37 research outputs found
How Do DFT-DCP, DFT-NL, and DFT-D3 Compare for the Description of London-Dispersion Effects in Conformers and General Thermochemistry?
The dispersion-core-potential
corrected B3LYP-DCP method (Torres
and DiLabio <i>J. Phys. Chem. Lett.</i> <b>2012</b>, <i>3</i>, 1738) is for the first time thoroughly assessed
and compared with the B3LYP-NL (Hujo and Grimme <i>J. Chem. Theory
Comput.</i> <b>2011</b>, <i>7</i>, 3866) and
B3LYP-D3 (Grimme et al. <i>J. Comput. Chem.</i> <b>2011</b>, <i>32</i>, 1456) methods for a broad range of chemical
problems that particularly shed light on intramolecular London-dispersion
effects in conformers and general thermochemistry. The analysis is
based on a compilation of 473 reference cases, the majority of which
are taken from the GMTKN30 database (Goerigk and Grimme <i>J.
Chem. Theory Comput.</i> <b>2010</b>, <i>6</i>, 107; <b>2011</b>, <i>7</i>, 291). The results confirm
previous findings that B3LYP-DCP indeed predicts very good binding
energies for noncovalently bound complexes, particularly with small
basis sets. However, problems are identified for the description of
intramolecular effects in some conformers and chemical reactions,
for which B3LYP-DCP sometimes gives results similar or worse than
uncorrected B3LYP. Surprisingly large errors for total atomization
energies reveal an unwanted influence of the DCPs on the short-range
electronic structure of the investigated systems. However, a recently
modified carbon potential for B3LYP-DCP (DiLabio et al. <i>Theor.
Chem. Acc.</i> <b>2013</b>, <i>132</i>, 1389)
was additionally tested that seems to solve most of those problems
and provides improved results. An overall comparison between all tested
methods shows that B3LYP-NL is the most robust and accurate approach,
closely followed by B3LYP-D3. This is also true when small basis sets
of double-ζ quality are applied for which those methods have
not been parametrized. However, binding energies of noncovalently
bound complexes can be more strongly influenced by basis-set superposition-error
effects than for B3LYP-DCP. Finally, it is noted that the DFT-D3 and
DFT-NL schemes are readily applicable to a large range of chemical
elements and they are therefore particularly recommended for more
general applications
Treating London-Dispersion Effects with the Latest Minnesota Density Functionals: Problems and Possible Solutions
It
is shown that the latest Minnesota density functionals (SOGGA11,
M11-L, N12, MN12-L, SOGGA11-X, M11, N12-SX, and MN12-SX) do not properly
describe London-dispersion interactions. Grimme’s DFT-D3 correction
can solve this problem partially; however, double-counting of medium-range
electron correlation can occur. For the related M06-L functional,
the alternative VV10 van der Waals kernel is tested, but it experiences
similar double-counting. Most functionals give unphysical dissociation
curves for the argon dimer, an indication for method-inherent problems,
and further investigation is recommended. These results are further
evidence that the London-dispersion problem in density functional
theory approximations is unlikely to be solved by mere empirical optimization
of functional parameters, unless the functionals contain components
that ensure the correct asymptotic long-range behavior. London dispersion
is ubiquitous, which is why the reported findings are not only important
for theoreticians but also a reminder to the general chemist to carefully
consider their choice of method before undertaking computational studies
Double-Hybrid Density Functionals Provide a Balanced Description of Excited <sup>1</sup>L<sub>a</sub> and <sup>1</sup>L<sub>b</sub> States in Polycyclic Aromatic Hydrocarbons
The time-dependent density functional theory (TD-DFT) double-hybrid methods TD-B2-PLYP and TD-B2GP-PLYP are applied to five linear and 12 nonlinear polycyclic aromatic hydrocarbons. The absolute errors compared to experiment for the two lowest-lying 1La and 1Lb excited states are evaluated and it is also tested whether the energetic order of those states and their energy difference is reproduced correctly. The results are compared to published CC2, global hybrid, and long-range corrected hybrid TD-DFT results. The two double-hybrids outmatch the other methods in terms of absolute and relative accuracy without an empirical adjustment of parameters. Although of different electronic character, both types of states are described on an equal footing by the double-hybrids. Particularly, the B2GP-PLYP functional yields very good results, which is in accordance with previous benchmarks
Efficient and Accurate Double-Hybrid-Meta-GGA Density FunctionalsEvaluation with the Extended GMTKN30 Database for General Main Group Thermochemistry, Kinetics, and Noncovalent Interactions
We present an extended and improved version of our recently published database for general main group thermochemistry, kinetics, and noncovalent interactions [J. Chem. Theory Comput. 2010, 6, 107], which is dubbed GMTKN30. Furthermore, we suggest and investigate two new double-hybrid-meta-GGA density functionals called PTPSS-D3 and PWPB95-D3. PTPSS-D3 is based on reparameterized TPSS exchange and correlation contributions; PWPB95-D3 contains reparameterized PW exchange and B95 parts. Both functionals contain fixed amounts of 50% Fock-exchange. Furthermore, they include a spin-opposite scaled perturbative contribution and are combined with our latest atom-pairwise London-dispersion correction [J. Chem. Phys. 2010, 132, 154104]. When evaluated with the help of the Laplace transformation algorithm, both methods scale as N4 with system size. The functionals are compared with the double hybrids B2PLYP-D3, B2GPPLYP-D3, DSD-BLYP-D3, and XYG3 for GMTKN30 with a quadruple-ζ basis set. PWPB95-D3 and DSD-BLYP-D3 are the best functionals in our study and turned out to be more robust than B2PLYP-D3 and XYG3. Furthermore, PWPB95-D3 is the least basis set dependent and the best functional at the triple-ζ level. For the example of transition metal carbonyls, it is shown that, mainly due to the lower amount of Fock-exchange, PWPB95-D3 and PTPSS-D3 are better applicable than the other double hybrids. Finally, we discuss in some detail the XYG3 functional [Proc. Nat. Acad. Sci. U.S.A. 2009, 106, 4963], which makes use of B3LYP orbitals and electron densities. We show that it is basically a highly nonlocal variant of B2PLYP and that its partially good performance is mainly due to a larger effective amount of perturbative correlation compared to other double hybrids. We finally recommend the PWPB95-D3 functional in general chemistry applications
Benchmarking Density Functional Theory Methods for Metalloenzyme Reactions: The Introduction of the MME55 Set
We
present a new benchmark set of metalloenzyme model reaction
energies and barrier heights that we call MME55. The set contains
10 different enzymes, representing eight transition metals, both open
and closed shell systems, and system sizes of up to 116 atoms. We
use four DLPNO–CCSD(T)-based approaches to
calculate reference values against which we then benchmark the performance
of a range of density functional approximations with and without dispersion
corrections. Dispersion corrections improve the results across the
board, and triple-ζ basis sets provide the best balance of efficiency
and accuracy. Jacob’s ladder is reproduced for the whole set
based on averaged mean absolute (percent) deviations, with the double
hybrids SOS0-PBE0-2-D3(BJ) and revDOD-PBEP86-D4 standing out as the
most accurate methods for the MME55 set. The range-separated hybrids
ωB97M-V and ωB97X-V also perform well here and can be
recommended as a reliable compromise between accuracy and efficiency;
they have already been shown to be robust across many other types
of chemical problems, as well. Despite the popularity of B3LYP in
computational enzymology, it is not a strong performer on our benchmark
set, and we discourage its use for enzyme energetics
Exploring CPS-Extrapolated DLPNO–CCSD(T<sub>1</sub>) Reference Values for Benchmarking DFT Methods on Enzymatically Catalyzed Reactions
Domain-based
local pair natural orbital coupled-cluster
singles
doubles with perturbative triples [DLPNO–CCSD(T)] is regularly
used to calculate reliable benchmark reference values at a computational
cost significantly lower than that of canonical CCSD(T). Recent work
has shown that even greater accuracy can be obtained at only a small
additional cost through extrapolation to the complete PNO space (CPS)
limit. Herein, we test two levels of CPS extrapolation, CPS(5,6),
which approximates the accuracy of standard TightPNO, and CPS(6,7),
which surpasses it, as benchmark values to test density functional
approximations (DFAs) on a small set of organic and transition-metal-dependent
enzyme active site models. Between the different reference levels
of theory, there are changes in the magnitudes of the absolute deviations
for all functionals, but these are small and there is minimal impact
on the relative rankings of the tested DFAs. The differences are more
significant for the metalloenzymes than the organic enzymes, so we
repeat the tests on our entire ENZYMES22 set of organic enzyme active
site models [Wappett, D. A.; Goerigk, L. J. Phys. Chem. A 2019, 123, 7057–7074] to confirm
that using the CPS extrapolations for the reference values has negligible
impact on the benchmarking outcomes. This means that we can particularly
recommend CPS(5,6) as an alternative to standard TightPNO settings
for calculating reference values, increasing the applicability of
DLPNO–CCSD(T) in benchmarking reaction energies and barrier
heights of larger models of organic enzymes. DLPNO–CCSD(T1)/CPS(6,7) energies for ENZYMES22 are finally presented as
updated reference values for the set, reflecting the recent improvements
in the method
A General Database for Main Group Thermochemistry, Kinetics, and Noncovalent Interactions − Assessment of Common and Reparameterized (<i>meta</i>-)GGA Density Functionals
We present a quantum chemistry benchmark database for general main group thermochemistry, kinetics, and noncovalent interactions (GMTKN24). It is an unprecedented compilation of 24 different, chemically relevant subsets that either are taken from already existing databases or are presented here for the first time. The complete set involves a total of 1.049 atomic and molecular single point calculations and comprises 731 data points (relative chemical energies) based on accurate theoretical or experimental reference values. The usefulness of the GMTKN24 database is shown by applying common density functionals on the (meta-)generalized gradient approximation (GGA), hybrid-GGA, and double-hybrid-GGA levels to it, including an empirical London dispersion correction. Furthermore, we refitted the functional parameters of four (meta-)GGA functionals based on a fit set containing 143 systems, comprising seven chemically different problems. Validation against the GMTKN24 and the molecular structure (bond lengths) databases shows that the reparameterization does not change bond lengths much, whereas the description of energetic properties is more prone to the parameters’ values. The empirical dispersion correction also often improves for conventional thermodynamic problems and makes a functional’s performance more uniform over the entire database. The refitted functionals typically have a lower mean absolute deviation for the majority of subsets in the proposed GMTKN24 set. This, however, is also often accompanied at the expense of poor performance for a few other important subsets. Thus, creating a broadly applicable (and overall better) functional by just reparameterizing existing ones seems to be difficult. Nevertheless, this benchmark study reveals that a reoptimized (i.e., empirical) version of the TPSS-D functional (oTPSS-D) performs well for a variety of problems and may meet the standards of an improved functional. We propose validation against this new compilation of benchmark sets as a definitive way to evaluate a new quantum chemical method’s true performance
Calculation of Electronic Circular Dichroism Spectra with Time-Dependent Double-Hybrid Density Functional Theory
Time-dependent double-hybrid density functional theory is applied to the calculation of the electronic circular dichroism (CD) spectra of molecules. The TD-B2PLYP method is based on vertical excitation energies obtained from its hybrid-GGA part B2LYP in a conventional TD-DFT linear response treatment and a CIS(D) type perturbation correction for these excited states. A new benchmark set of six representative organic molecules with a wide variety of different electronic character is introduced for this investigation. The simulated TD-B2PLYP spectra are compared to experiment and those computed with the TD-B2LYP (i.e., no CIS(D) correction) and TD-B3LYP methods. Vertical excitation energies at the perturbatively corrected level are, in the majority of cases, more accurate than, e.g., with TD-B3LYP. Relative band positions are also reproduced better. In one example, the high-energy CD bands are not computed with sufficient accuracy, which is attributed to an instability of the perturbation correction. Due to the inclusion of a large portion of “exact” exchange (53%) in B2PLYP, the spectra feature less artificially created excited states and CD bands than with TD-B3LYP. In all six examined cases, TD-B2PLYP gives qualitatively correct spectra, whereas the hybrid functionals sometimes show a more erratic behavior. Therefore, we can recommend the use of the new double-hybrid approach for the computation of CD and the prediction of absolute configurations of chiral molecules
