126 research outputs found
Dynamic Interplay of Spectrosome and Centrosome Organelles in Asymmetric Stem Cell Divisions
<div><p>Stem cells have remarkable self-renewal ability and differentiation potency, which are critical for tissue repair and tissue homeostasis. Recently it has been found, in many systems (e.g. gut, neurons, and hematopoietic stem cells), that the self-renewal and differentiation balance is maintained when the stem cells divide asymmetrically. <i>Drosophila</i> male germline stem cells (GSCs), one of the best characterized model systems with well-defined stem cell niches, were reported to divide asymmetrically, where centrosome plays an important role. Utilizing time-lapse live cell imaging, customized tracking, and image processing programs, we found that most acentrosomal GSCs have the spectrosomes reposition from the basal end (wild type) to the apical end close to hub-GSC interface (acentrosomal GSCs). In addition, these apically positioned spectrosomes were mostly stationary while the basally positioned spectrosomes were mobile. For acentrosomal GSCs, their mitotic spindles were still highly oriented and divided asymmetrically with longer mitosis duration, resulting in asymmetric divisions. Moreover, when the spectrosome was knocked out, the centrosomes velocity decreased and centrosomes located closer to hub-GSC interface. We propose that in male GSCs, the spectrosome recruited to the apical end plays a complimentary role in ensuring proper spindle orientation when centrosome function is compromised.</p></div
Dynamic migration patterns of spectrosomes are quantified utilizing time-lapse live-imaging.
<p><b>(A)</b> Spectrosome localization in <i>DSas4-mut</i> becomes predominantly apical compared to wild type. #: p<0.05. <b>(B)</b> Live image sequences shows apically (to the hub cells) migrating spectrosome in a dividing <i>DSas4-mut</i> GSC. Arrowhead: spectrosome. *: hub cells. Yellow dash-line: GSC. <b>(C)</b> In wild type GSCs, large majority of spectrosomes were mobile and located basally (39%) during interphase. In <i>DSas4-mut</i> GSCs, majority of spectrosomes were stationary and located apically (54%). Wild type: n = 23, DSas4-mut: n = 24. <b>(D)</b><i>DSas4-mut</i> GSCs had higher percentage of spectrosomes migrating from apical to the basal side prior to mitosis. Spectrosome switches are categorized as such if they migrate within 30 mins prior to mitosis (identified by nuclear envelope breakdown).</p
Most spindle orientation at anaphase and stem cell number are maintained in GSCs without centrosomes.
<p><b>(A)</b> Live imaging reveals that most <i>DSas4-mut</i> GSCs maintain their spindle orientation compared to the wild type. <b>(B)</b> There is no significant difference of GSC number per testes in <i>DSas4-mut</i> and wild type flies. <b>(C)</b> The mitosis duration from pro-metaphase to anaphase in <i>DSas4-mut</i> GSCs is significantly longer than that in wild type.</p
Spectrosome Knockout minimally affects centrosome orientation, spindle orientation, mitosis duration, and stem cell numbers in male GSCs.
<p><b>(A)</b> Centrosome misorientation during interphase was analyzed from time lapse image sequences, and there is no significant difference between the <i>hts-mut</i> and the wild type. <b>(B)</b> There is minimal change in the spindle orientation between the <i>hts-mut</i> and the wild type. <b>(C)</b> Mitosis duration is not affected in <i>hts-mut</i> compared to the wild type when measured from nuclear envelope breakdown time to anaphase. <b>(D)</b> There is no significant difference for GSC number per testis in hts-mut and wild type flies.</p
Centrosome velocity and distance to hub-GSC interface change in <i>hts-mut</i> GSCs.
<p>Based on the centrosome tracking analysis of live-image sequences, the <b>A)</b> Interphase centrosome velocities are shown for both <i>hts-mut</i> GSCs and wild type GSCs (p<0.01 between <i>hts-mut</i> and wild type for both GSC-inherited and GB-inherited centrosomes), and the <b>B)</b> GSC-inherited centrosome distance to the hub-GSC interphase histograms are shown for both <i>hts-mut</i> and wild type GSCs (p<0.01).</p
Accelerating Computation of Acidity Constants and Redox Potentials for Aqueous Organic Redox Flow Batteries by Machine Learning Potential-Based Molecular Dynamics
Due to the increased concern about energy and environmental
issues,
significant attention has been paid to the development of large-scale
energy storage devices to facilitate the utilization of clean energy
sources. The redox flow battery (RFB) is one of the most promising
systems. Recently, the high cost of transition-metal complex-based
RFB has promoted the development of aqueous RFBs with redox-active
organic molecules. To expand the working voltage, computational chemistry
has been applied to search for organic molecules with lower or higher
redox potentials. However, redox potential computation based on implicit
solvation models would be challenging due to difficulty in parametrization
when considering the complex solvation of supporting electrolytes.
Besides, although ab initio molecular dynamics (AIMD) describes the
supporting electrolytes with the same level of electronic structure
theory as the redox couple, the application is impeded by the high
computation costs. Recently, machine learning molecular dynamics (MLMD)
has been illustrated to accelerate AIMD by several orders of magnitude
without sacrificing the accuracy. It has been established that redox
potentials can be computed by MLMD with two separated machine learning
potentials (MLPs) for reactant and product states, which is redundant
and inefficient. In this work, an automated workflow is developed
to construct a universal MLP for both states, which can compute the
redox potentials or acidity constants of redox-active organic molecules
more efficiently. Furthermore, the predicted redox potentials can
be evaluated at the hybrid functional level with much lower costs,
which would facilitate the design of aqueous organic RFBs
Identifying Trapped Electronic Holes at the Aqueous TiO<sub>2</sub> Interface
Trapping
of photogenerated holes near or at the surface is believed
to be a crucial step in the photo-oxidation of water and organic pollutants
by TiO<sub>2</sub>. The detailed nature of these localized states
is however still a matter of debate. Here, we investigate this question
for the rutile TiO<sub>2</sub>(110) water interface using ab initio
molecular dynamics simulation methods based on a state-of-the-art
hybrid density functional. We identify the reactive surface trapped
holes as the OH<sup>•</sup> on five-coordinated terminal Ti
and its deprotonated O<sup>•–</sup>. Our calculations
show that the large reorganization energies hold the key to reconciling
some of the conflicting interpretations of spectroscopic and thermodynamic
measurements reported in the literature. We also observe an asymmetry
in reorganization energies owing to the pinning of the valence band
of TiO<sub>2</sub>. This has important implications for the understanding
of the heterogeneous electron transfer kinetics driving photo-oxidation
Aligning Electronic Energy Levels in Pyridine-Assisted CO<sub>2</sub> Activation at the GaP(110)/Water Interface Using Ab Initio Molecular Dynamics
Photoelectrochemical CO2 reduction has attracted
considerable
attention as a route to convert CO2 into value-added products.
Pyridine (Py)-catalyzed CO2 reduction on a GaP photoelectrode
has been shown to be a promising photoelectrochemical system to produce
methanol under the underpotential condition. However, whether the
dramatic decrease in overpotential can be attributed to the CO2 activation by the formation of the zwitterionic complex PyCO2 is currently under debate. Because the alignment between
the band edge positions of photoelectrodes and the redox potentials
of species determines the desired redox reactions, calculations have
been performed to evaluate the band edge positions of GaP and the
redox potentials of relevant reactions. In these works, the water
effect has been either neglected or approximated by using the dielectric
continuum or a few explicit water molecules, which may not be enough
to determine the accurate energy level alignment in realistic chemical
environments. Moreover, calculations performed in conventional implicit
solvation models suggested that PyCO2 is unstable in homogeneous
aqueous, while the bonding interactions between CO2 and
N species have been experimentally detected. Thus, we performed ab
initio molecular dynamics to investigate the band alignment of GaP,
as well as the stability and the reducibility of PyCO2 in
more realistic chemical environments. Our results showed that the
solvation effect and the pyridine adsorption could shift up the band
edge positions of GaP significantly, and neglecting such effects could
result in a serious underestimation of the activity of the photocatalysts.
More importantly, we found that the interaction between pyridine and
CO2 at the GaP(110)/water interface is strong due to the
synergetic stabilization effect, which leads to an about 0.6 V less
negative redox potential of PyCO2/PyCO2– than that of CO2/CO2– in the homogeneous aqueous. Furthermore, we compared the redox potential
of PyCO2/PyCO2– at the GaP(110)/water
interface with the conduction band minimum of GaP, which showed that
the reduction of the adsorbed PyCO2 is thermodynamically
feasible. Our results suggested that the CO2 activation
by the formation of PyCO2 at the GaP(110)/water interface
could be responsible for the low overpotential. This work provides
valuable insights into the mechanism of pyridine-catalyzed CO2 reduction on GaP and could pave the way for the development
of efficient catalysts for CO2 reduction
Density Functional Theory Calculation of the Band Alignment of (101̅0) In<sub><i>x</i></sub>Ga<sub>1–<i>x</i></sub>N/Water Interfaces
Conduction band edge (CBE) and valence
band edge (VBE) positions
of In<sub><i>x</i></sub>Ga<sub>1–<i>x</i></sub>N photoelectrodes were computed using density functional theory
methods. The band edges of fully solvated GaN and InN model systems
were aligned with respect to the standard hydrogen electrode using
a molecular dynamics hydrogen electrode scheme applied earlier to
TiO<sub>2</sub>/water interfaces. Similar to the findings for TiO<sub>2</sub>, we found that the Purdew–Burke–Ernzerhof (PBE)
functional gives a VBE potential which is too negative by 1 V. This
cathodic bias is largely corrected by application of the Heyd–Scuseria–Ernzerhof
(HSE06) hybrid functional containing a fraction of Hartree–Fock
exchange. The effect of a change of composition was investigated using
simplified model systems consisting of vacuum slabs covered on both
sides by one monolayer of H<sub>2</sub>O. The CBE was found to vary
linearly with In content. The VBE, in comparison, is much less sensitive
to composition. The data show that the band edges straddle the hydrogen
and oxygen evolution potentials for In fractions less than 47%. The
band gap was found to exceed 2 eV for an In fraction less than 54%
High-Oxidation-State 3d Metal (Ti–Cu) Complexes with <i>N</i>‑Heterocyclic Carbene Ligation
High-oxidation-state 3d metal species
have found a wide range of
applications in modern synthetic chemistry and materials science.
They are also implicated as key reactive species in biological reactions.
These applications have thus prompted explorations of their formation,
structure, and properties. While the traditional wisdom regarding
these species was gained mainly from complexes supported by nitrogen-
and oxygen-donor ligands, recent studies with <i>N</i>-heterocyclic
carbenes (NHCs), which are widely used for the preparation of low-oxidation-state
transition metal complexes in organometallic chemistry, have led to
the preparation of a large variety of isolable high-oxidation-state
3d metal complexes with NHC ligation. Since the first report in this
area in the 1990s, isolable complexes of this type have been reported
for titaniumÂ(IV), vanadiumÂ(IV,V), chromiumÂ(IV,V), manganeseÂ(IV,V),
ironÂ(III,IV,V), cobaltÂ(III,IV,V), nickelÂ(IV), and copperÂ(II). With
the aim of providing an overview of this intriguing field, this Review
summarizes our current understanding of the synthetic methods, structure
and spectroscopic features, reactivity, and catalytic applications
of high-oxidation-state 3d metal NHC complexes of titanium to copper.
In addition to this progress, factors affecting the stability and
reactivity of high-oxidation-state 3d metal NHC species are also presented,
as well as perspectives on future efforts
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