Planning for a second wave pandemic of COVID-19 and planning for winter : A statement from the Association of Schools of Public Health in the European Region

Planning for a second wave pandemic of COVID-19 and planning for winter : A statement from the Association of Schools of Public Health in the European Regio

Prevalence of non-aureus Staphylococcus species causing intramammary infections in Canadian dairy herds

Non-aureus staphylococci (NAS), the microorganisms most frequently isolated from bovine milk worldwide, are a heterogeneous group of numerous species. To establish their importance as a group, the distribution of individual species needs to be determined. In the present study, NAS intramammary infection (IMI) was defined as a milk sample containing ≥1,000 cfu/mL in pure or mixed culture that was obtained from a cohort of cows assembled by the Canadian Bovine Mastitis Research Network. Overall, 6,213 (6.3%) of 98,233 quarter-milk samples from 5,149 cows and 20,305 udder quarters were associated with an NAS IMI. Of the 6,213 phenotypically identified NAS isolates, 5,509 (89%) were stored by the Canadian Bovine Mastitis Research Network Mastitis Pathogen Collection and characterized using partial sequencing of the rpoB housekeeping gene, confirming 5,434 isolates as NAS. Prevalence of each NAS species IMI was estimated using Bayesian models, with presence of a specific NAS species as the outcome. Overall quarter-level NAS IMI prevalence was 26%. The most prevalent species causing IMI were Staphylococcus chromogenes (13%), Staphylococcus simulans (4%), Staphylococcus haemolyticus (3%), Staphylococcus xylosus (2%), and Staphylococcus epidermidis (1%). The prevalence of NAS IMI as a group was highest in first-parity heifers and was evenly distributed throughout cows in parities ≥2. The IMI prevalence of some species such as S. chromogenes, S. simulans, and S. epidermidis differed among parities. Overall prevalence of NAS IMI was 35% at calving, decreased over the next 10 d, and then gradually increased until the end of lactation. The prevalence of S. chromogenes, Staphylococcus gallinarum, Staphylococcus cohnii, and Staphylococcus capitis was highest at calving, whereas the prevalence of S. chromogenes, S. haemolyticus, S. xylosus, and S. cohnii increased during lactation. Although the overall prevalence of NAS IMI was similar across barn types, the prevalence of S. simulans, S. xylosus, S. cohnii, Staphylococcus saprophyticus, S. capitis, and Staphylococcus arlettae IMI was higher in tie-stall barns; the prevalence of S. epidermidis IMI was lowest; and the prevalence of S. chromogenes and Staphylococcus sciuri IMI was highest in bedded-pack barns. Staphylococcus simulans, S. epidermidis, S. xylosus, and S. cohnii IMI were more prevalent in herds with intermediate to high bulk milk somatic cell count (BMSCC) and S. haemolyticus IMI was more prevalent in herds with high BMSCC, whereas other common NAS species IMI were equally prevalent in all 3 BMSCC categories. Distribution of NAS species IMI differed among the 4 regions of Canada. In conclusion, distribution differed considerably among NAS species IMI; therefore, accurate identification (species level) is essential for studying NAS epidemiology

Arctic Tundra Vegetation Functional Types Based on Photosynthetic Physiology and Optical Properties

Climate change in tundra regions may alter vegetation species composition and ecosystem carbon balance. Remote sensing provides critical tools for monitoring these changes as optical signals provide a way to scale from plot measurements to regional patterns. Gas exchange measurements of pure patches of key vegetation functional types (lichens, mosses, and vascular plants) in sedge tundra at Barrow AK, show three significantly different values of light use efficiency (LUE) with values of 0.013+/-0.001, 0.0018+/-0.0002, and 0.0012 0.0001 mol C/mol absorbed quanta for vascular plants, mosses and lichens, respectively. Further, discriminant analysis of patch reflectance identifies five spectral bands that can separate each vegetation functional type as well as nongreen material (bare soil, standing water, and dead leaves). These results were tested along a 100 m transect where midsummer spectral reflectance and vegetation coverage were measured at one meter intervals. Area-averaged canopy LUE estimated from coverage fractions of the three functional types varied widely, even over short distances. Patch-level statistical discriminant functions applied to in situ hyperspectral reflectance successfully unmixed cover fractions of the vegetation functional types. These functions, developed from the tram data, were applied to 30 m spatial resolution Earth Observing-1 Hyperion imaging spectrometer data to examine regional variability in distribution of the vegetation functional types and from those distributions, the variability of LUE. Across the landscape, there was a fivefold variation in tundra LUE that was correlated to a spectral vegetation index developed to detect vegetation chlorophyll content

Parameter estimation on gravitational waves from neutron-star binaries with spinning components

Inspiraling binary neutron stars are expected to be one of the most significant sources of gravitational-wave signals for the new generation of advanced ground-based detectors. We investigate how well we could hope to measure properties of these binaries using the Advanced LIGO detectors, which began operation in September 2015. We study an astrophysically motivated population of sources (binary components with masses $1.2~\mathrm{M}_\odot$--$1.6~\mathrm{M}_\odot$ and spins of less than $0.05$) using the full LIGO analysis pipeline. While this simulated population covers the observed range of potential binary neutron-star sources, we do not exclude the possibility of sources with parameters outside these ranges; given the existing uncertainty in distributions of mass and spin, it is critical that analyses account for the full range of possible mass and spin configurations. We find that conservative prior assumptions on neutron-star mass and spin lead to average fractional uncertainties in component masses of $\sim 16\%$, with little constraint on spins (the median $90\%$ upper limit on the spin of the more massive component is $\sim 0.7$). Stronger prior constraints on neutron-star spins can further constrain mass estimates, but only marginally. However, we find that the sky position and luminosity distance for these sources are not influenced by the inclusion of spin; therefore, if LIGO detects a low-spin population of BNS sources, less computationally expensive results calculated neglecting spin will be sufficient for guiding electromagnetic follow-up.Comment: 10 pages, 9 figure

Bodies, Representations, Situations, Practices: qualitative research on affect, emotion and feeling

We introduce this special issue of Qualitative Research in Psychology by discussing four themes which, in our view, characterise the collective significance of the papers in this special issue. Even in highlighting these thematic similarities, however, we point to important differences in their manifestation across different papers. In discussing bodies, we highlight an underexplored distinction between the body as ground of experience and the body as the enabler of experience. We also draw attention to three issues relating to (linguistic) representations of feelings, emotions and affect: the problem of ineffability; the role of naming feeling; and how to methodologically and analytically account for differences in the ways that feelings are talked about and named. Regarding situatedness in space and time, we note at least four analytical positions, which frame and reveal different aspects of affective phenomena. Finally, with respect to affective practices we identify two quite different approaches that, whilst sharing some characteristics, are different enough to warrant further specification when researchers deploy this term. Whilst welcoming the apparent trend away from purely language-based methods, we also offer some suggestions for how researchers can move further down this path. Nonetheless qualitative research on feeling, affect and emotion is in fine fettle. As the contributions attest, the time is ripe for this special issue of Qualitative Research in Psychology

Target capture sequencing for phylogenomic and population studies in the Southeast Asian genus Palaquium (Sapotaceae)

ACKNOWLEDGEMENTS We thank the management of the National Parks Board and Singapore Botanic Gardens for providing continuous support, facilities and fieldwork approval in Singapore’s nature reserves. We appreciate the digital research team at the University of Aberdeen and the research/scientific computing teams at The James Hutton Institute and NIAB for providing technical support while using the computational resources on the respective HPC clusters, “Maxwell” and the “UK Crop Diversity Bioformatics HPC” (BBSRC grant BB/S019669/1), which have contributed to the results within this paper. We thank numerous staff at the Singapore Botanic Gardens, particularly Khoo-Woon Mui Hwang and Neo Wei Ling for strong technical support in the molecular lab, Matti Niissalo for generous sharing of lab protocols and bioinformatics tips, Choo Le Min for patient help with lab troubleshooting, Chong Kwek Yan and Chan Pin Jia for forest survey expertise, and Louise Neo for thoughtful field and R advice. Our sincere thanks are due to Herbarium staff at the Royal Botanic Garden Edinburgh, including Lesley Scott, for efficient assistance in sending silica-dried samples to the Singapore Botanic Gardens. We also thank Camille Christe at the Conservatoire et Jardin botaniques de la Ville de Genève for kind advice related to the taxon-specific baits’ setup and purchase FUNDING We are grateful to the Lady Yuen Peng McNeice Charitable Foundation for financial support of this study.Peer reviewedPublisher PD

Detecting and Monitoring Cracks in Aerospace Materials Using Post-Processing of TSA and AE Data

Thermoelastic stress analysis (TSA) is a non-contact technique for measuring the distribution of stress in the surface of a component subject to cyclic loading by using a sensitive infrared camera. The stress concentrations indicative of a crack can be located and tracked using an optical flow method, allowing the position of the crack-tip to be identified at a given time. Acoustic emission (AE) has been used to validate the TSA algorithm. AE events from cracking, located using the Delta-T Mapping method, were detected several seconds before the TSA algorithm first detected cracking; however, TSA provided significantly more accurate location information

European Public Health News

In this edition of European Public Health News, we will reflect on past achievements and how we build on those for upcoming activities. In my first EUPHA office column I describe the busy yet exciting autumn the EUPHA team has ahead of them and highlight some of our main plans. Kluge et al. from the WHO Regional Office for Europe go into how lessons from COVID-19 and Ukraine are shaping the deployment and work of Emergency Medical Teams. Middleton reflects on ASPHER’s achievements related to ensuring a vibrant multidisciplinary public health workforce now that he is reaching the end of his term as President for that organization. Finally, Barnhoorn and Busse describe the plenary programme of the European Public Health Conference that will take place 9–12 November 2022 in Berlin. Topics range from financial protection and the European Health Data Space to health system performance assessment and health promotion.Peer Reviewe

Evidence for hierarchical black hole mergers in the second LIGO--Virgo gravitational-wave catalog

We study the population properties of merging binary black holes in the second LIGO--Virgo Gravitational-Wave Transient Catalog assuming they were all formed dynamically in gravitationally bound clusters. Using a phenomenological population model, we infer the mass and spin distribution of first-generation black holes, while self-consistently accounting for hierarchical mergers. Considering a range of cluster masses, we see compelling evidence for hierarchical mergers in clusters with escape velocities $\gtrsim 100~\mathrm{km\,s^{-1}}$. For our most probable cluster mass, we find that the catalog contains at least one second-generation merger with $99\%$ credibility. We find that the hierarchical model is preferred over an alternative model with no hierarchical mergers (Bayes factor $\mathcal{B} > 1400$) and that GW190521 is favored to contain two second-generation black holes with odds $\mathcal{O}>700$, and GW190519, GW190602, GW190620, and GW190706 are mixed-generation binaries with $\mathcal{O} > 10$. However, our results depend strongly on the cluster escape velocity, with more modest evidence for hierarchical mergers when the escape velocity is $\lesssim 100~\mathrm{km\,s^{-1}}$. Assuming that all binary black holes are formed dynamically in globular clusters with escape velocities on the order of tens of $\mathrm{km\,s^{-1}}$, GW190519 and GW190521 are favored to include a second-generation black hole with odds $\mathcal{O}>1$. In this case, we find that $99\%$ of black holes from the inferred total population have masses that are less than $49\,M_{\odot}$, and that this constraint is robust to our choice of prior on the maximum black hole mass.Comment: 15 pages, 11 figures, 1 appendi