Data Matrices

All concatenated matrices in PHYLIP and NEXUS formats. The names of the concatenated matrices correspond to Table 1

Code

Scripts used in analyses and plotting selected figures. See also https://github.com/marekborowiec/metazoan_phylogenomics/blob/master/gene_stats.

Partition Statistics

Spreadsheet containing data for all of the partition-specific statistics used to construct the various matrices described in the paper

Single Gene Alignments

Trimmed alignments for all 1080 loci in FASTA format

PartitionFinder Results

Control files, data and results for all PartitionFinder analyses on concatenated matrices conducted in the study

PhyloBayes Results

Results of all PhyloBayes analyses conducted in the study including Bayesien posterior densities and traces of selected parameters as well as consensus trees

Orthologous Groups

Trimmed alignments for each of 1,161 orthologous groups recovered from OrhtologID analyses of gene models from the 36 metazoan and outgroup genomes

RAxML_single_genes

Results for each of 1,080 single gene RAxML analyse

Jackknife

Results of 108-locus and 20-locus jackknife analyses. See Figure 3

OrthologID Output

Data partitions from OrthologID aligned and in NEXUS format. "full" dataset includes all orthologs recovered and "m27" includes only partitions present in at least 27 taxa