Additional file 1: of An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus

Table S1. 27,236 OGs of all the protein-coding genes in Arabidopsis thaliana, Glycine max, Brassica napus and Sesamum indicum. Table S2. Comparisons of sequence similarity-based protein families between Glycine max (gma) and Brassica napus (bna). Table S3. List of selected genes related to carbohydrate metabolism and lipid biosynthesis in Arabidopsis thaliana. Table S4. 230 candidate orthologous groups related to oil synthesis of seed for soybean, rapeseed and Arabidopsis. Table S5. Candidate orthologous groups (OGs) for the difference of seed oil content between rapeseed and soybean. Note: Genes with red color were negatively correlated with seed oil content and were obtained by cluster analysis of gene expression. The 44 OGs with black color differed in gene relative copy number between soybean and rapeseed. Table S6. Expressional contents and relative copy number of candidate genes associated with the difference of seed oil content in rapeseed and soybean. Note: The stages t1, t2, t3 and t4 were defined as R3, R4, R7 and R8 in soybean, and 2, 4, 6, and 8 weeks after pollination (WAP) in rapeseed, respectively. (XLSX 37341 kb