10 research outputs found

    Bacterial hits found in four genomic libraries.

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    <p>Hits for the bacterial species are displayed next to the chart pie for species with ≥4% of the hits. For the three pycnogonid species, Gammaproteobacteria are predominant, whereas for the vent limpet <i>Lepetodrilus</i> sp. nov. different bacterial groups were detected. The colours of the charts relate to the phyla/classes of Bacteria (see legend).</p

    Total number and genomic density of microsatellites found in the libraries before and after applying stringent filtering criteria (best primers, single read contigs only, see Supporting information S3 for further information).

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    <p>Results are given for three different sets of search parameters which correspond to search parameters in: Mayer et al. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0049202#pone.0049202-Mayer2" target="_blank">[48]</a> but filtering for perfect microsatellites only, Santana et al. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0049202#pone.0049202-Santana1" target="_blank">[15]</a>, Gardner et al. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0049202#pone.0049202-Gardner1" target="_blank">[4]</a>.</p

    Percentage of contigs with candidate microsatellites found in the non-enriched libraries with three different search parameter settings.

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    <p>Search parameter settings were adapted from the three studies <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0049202#pone.0049202-Gardner1" target="_blank">[4]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0049202#pone.0049202-Santana1" target="_blank">[15]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0049202#pone.0049202-Mayer2" target="_blank">[48]</a> and used in Phobos <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0049202#pone.0049202-Mayer1" target="_blank">[47]</a> runs. Numbers on top of the columns represent the total number of perfect microsatellites retained after restrictive filtering for quality criteria.</p
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