Using molecular tools to differentiate closely related blackfly species of the genus Simulium

Biodiversity data are the foundation for conservation and managemet and taxonomy provides the reference system, skills and tools used to identify organisms. Species level data such as species richness, composition and diversity are common metrics. However, species level identification of organisms tends to be neglected within ecological work, especially within monitoring programmes, but also in conservation biology (Giangrande, 2003). This is because collection of species level data is time consuming, with identification of species-specific characteristics traditionally involving lengthy examination of samples using microscopy. In addition it is costly and species level data is almost impossible to collect if the taxa involved are species rich and difficult to identify (Báldi 1999). Other reasons why species level identification is neglected include the fact that sample collection can damage organisms, so diagnostic morphological features are lost, or that individuals may be in a life history stage or of a sex that does not have diagnostic morphological characteristics. Furthermore, the numbers of available expert taxonomists needed for species identification are in decline and have been for several decades. Species identification using molecular taxonomy where DNA is used as a marker is championed as a tool for resolving a range of morphological problems, such as the association of all life history stages, correlating male and female specimens to the same species and identifying partial specimens. Traditional taxonomy is built around morphological variations between species, with systematic inferences based upon shared physical characters. In molecular taxonomy on the other hand, proteins and genes are used to determine evolutionary relationships. ’DNA barcoding’ aims to provide an efficient method for species-level identification and it is thought that it will provide a powerful tool for taxonomic and biodiversity research (Hajibabaei et al. 2007). Cited strengths of a molecular based approach to species identification include the potential universality and objective nature of DNA data as taxonomic information, the usefulness of molecular data in animal groups characterized by morphological cryptic characters and the use of DNA sequence information to determine otherwise ‘unidentifiable’ biological material (such as incomplete specimens or immature specimens). Its aim is to increase the speed, precision and efficiency of field studies involving diverse and difficult to identify taxa and it has the potential to be automated to provide a rapid and consistently accurate supplementary identification system to traditional taxonomy. This project was a proof-of-concept study that investigated the feasibility of using DNA barcodes to differentiate closely related blackfly species of the genus Simulium. The longer term objective would be to apply such molecular approaches to organisms used in water quality monitoring and to biodiversity studies to provide a quick, robust but practical and cost effective tool for species identification. Great Britain is currently home to 33 morphospecies of blackfly many of which are morphologically close to other species and have been the cause of much systematic revision. In addition to evaluating the use of DNA barcodes in species identification, a non-destructive DNA extraction method was developed to preserve voucher pecimens that will allow a complete morphological classification to be carried after DNA extraction. Using molecular tools to differentiate closely related blackfly species of the genus Simulium v Finding an effective DNA barcode for an individual species involves accurate taxonomic identification and the retention of voucher specimens for future morphological studies. A rapid non-destructive method for DNA extraction from small insects was developed where no clean-up step was required prior to amplification and it was possible to extract DNA of sufficient quality in minutes retaining diagnostic morphological characteristics. For any molecular tool used for species discrimination, an important consideration is defining the specific genetic loci (e.g. the position of genes on a chromosome) to be monitored. All blackfly species in this study were successfully amplified with the standard barcoding coxI gene primer pair LCO1490 5'-GGT CAA CAA ATC ATA AAG ATA TTG G-3' and HCO2198 5'-TAA ACT TCA GGG TGA CCA AAA AAT CA-3' (Folmer et al. 1994) and we did not need to optimise or redesign the primer sequence

Resonant tunneling in fractional quantum Hall effect: superperiods and braiding statistics

We study theoretically resonant tunneling of composite fermions through their quasi-bound states around a fractional quantum Hall island, and find a rich set of possible transitions of the island state as a function of the magnetic field or the backgate voltage. These considerations have possible relevance to a recent experimental study, and bring out many subtleties involved in deducing fractional braiding statistics.Comment: Phys. Rev. Lett. in pres

User benefits and funding strategies

The justification, economic and technological benefits of NASA Space Programs (aside from pure scientific objectives), in improving the quality of life in the United States is discussed and outlined. Specifically, a three-step, systematic method is described for selecting relevant and highly beneficial payloads and instruments for the Interim Upper Stage (IUS) that will be used with the space shuttle until the space tug becomes available. Viable Government and private industry cost-sharing strategies which would maximize the number of IUS payloads, and the benefits obtainable under a limited NASA budget were also determined. Charts are shown which list the payload instruments, and their relevance in contributing to such areas as earth resources management, agriculture, weather forecasting, and many others

Summary of Voyager Design and Flight Loads

Estimates of flight loads for Voyager 1 and Voyager 2 are summarized and compared to the Voyager design loads obtained from the shock spectra/impedance method and to the loads obtained using space vehicle transient loads analysis. These estimates were obtained by using the measured flight accelerations at the launch vehicle/spacecraft interface as forcing functions for the Voyager mathematical model. Based on these data, an assessment of the shock spectra/impedance loads method used for Voyager is presented. The following conclusions were reached: (1) the shock spectra approach provided reasonable conservative design loads for Voyager, (2) care has to be executed to insure that all critical events are accounted for in constructing shock spectra envelopes, (3) the selection of critical events is not always obvious, especially for those flight events wherein the spacecraft dynamic characteristics are important, and (4) the success of the method is strongly dependent on the analysts' experience and judgement

Benchmark ultra-cool dwarfs in widely separated binary systems

Ultra-cool dwarfs as wide companions to subgiants, giants, white dwarfs and main sequence stars can be very good benchmark objects, for which we can infer physical properties with minimal reference to theoretical models, through association with the primary stars. We have searched for benchmark ultra-cool dwarfs in widely separated binary systems using SDSS, UKIDSS, and 2MASS. We then estimate spectral types using SDSS spectroscopy and multi-band colors, place constraints on distance, and perform proper motions calculations for all candidates which have sufficient epoch baseline coverage. Analysis of the proper motion and distance constraints show that eight of our ultra-cool dwarfs are members of widely separated binary systems. Another L3.5 dwarf, SDSS 0832, is shown to be a companion to the bright K3 giant Eta Cancri. Such primaries can provide age and metallicity constraints for any companion objects, yielding excellent benchmark objects. This is the first wide ultra-cool dwarf + giant binary system identified.Comment: 4 pages, 3 figures, conference, "New Technologies for Probing the Diversity of Brown Dwarfs and Exoplanets", oral tal

An inter-comparison of Arctic synoptic scale storms between four global reanalysis datasets

The Arctic is becoming more accessible as sea ice extent continues to decline, resulting in higher human exposure to Arctic storms. This study compares Arctic storm characteristics between the ECMWF-Interim Reanalysis, 55-year Japanese Reanalysis, NASA-Modern Era Retrospective Analysis for Research and Applications Version 2 and National Centre for Environmental Prediction-Climate Forecast System Reanalysis datasets between 1980 and 2017, in winter (DJF) and summer (JJA). It is shown that Arctic storm characteristics are sensitive to the variable used for storm tracking. Arctic storm frequency is found to be similar in summer and winter when using sea level pressure minima to track Arctic storms, whereas, the storm frequency is found to be higher in winter than summer when using 850 hPa relative vorticity to track storms, based on using the same storm tracking algorithm. It is also found that there are no significant trends in Arctic storm characteristics between 1980 and 2017. Given the sparsity of observations in the Arctic, it might be expected that there are large differences in Arctic storm characteristics between the reanalysis datasets. Though, some similar Arctic storm characteristics are found between the reanalysis datasets, it is found that the differences in Arctic storm characteristics between the reanalysis datasets are generally higher in winter than in summer. Overall, the results show that there are differences in Arctic storm characteristics between reanalysis datasets, but even larger differences can arise between using 850 hPa relative vorticity or mean sea level pressure as the storm tracking variable, which adds to the uncertainty associated with current Arctic storm characteristics

CTMC calculations of electron capture and ionization in collisions of multiply charged ions with elliptical Rydberg atoms

We have performed classical trajectory Monte Carlo (CTMC) studies of electron capture and ionization in multiply charged (Q=8) ion-Rydberg atom collisions at intermediate impact velocities. Impact parallel to the minor and to the major axis, respectively, of the initial Kepler electron ellipse has been investigated. The important role of the initial electron momentum distribution found for singly charged ion impact is strongly disminished for higher projectile charge, while the initial spatial distribution remains important for all values of Q studied.Comment: 3 pages, 5 figure