Additional file 7 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Cytoscape session file of the HTGs of Models 1, 2, 3 and 4 (CYS 82.4 kb)

Additional file 3 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Tabulated logical parameters for the regulatory network of cellular metabolic flexibility (PDF 60.1 kb)

Additional file 6 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Cytoscape session file of the STGs of Models 1, 2, 3 and 4 (CYS 967 kb)

Additional file 4 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Explanation and conversion of the biological properties into computation tree logic (CTL) (PDF 97.5 kb)

Additional file 8 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Archive containing alternative verification models from the review article constructed in GINsim (ZIP 11.3 kb)

Additional file 2 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

PDF showing a generic abstraction/reduction process for regulatory networks (PDF 573 kb)

Additional file 5 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Archive containing the SMBioNet and GINsim source file for the regulatory network of cellular metabolic flexibility (ZIP 10.1 kb)

Additional file 9 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Cytoscape session file visualising the RNA-seq expression data of endothelial cells (CYS 58.6 kb)

Additional file 1 of Logical modelling reveals the PDC-PDK interaction as the regulatory switch driving metabolic flexibility at the cellular level

Archive containing the SMBioNet and GINsim source files for toy example (ZIP 1.66 kb)

Additional file 1: of Exploring the cellular network of metabolic flexibility in the adipose tissue

The cellular network of metabolic flexibility with the visualised data (7Z 42 kb