17 research outputs found
Individual tree detection using template matching of multiple rasters derived from multispectral airborne laser scanning data
Multispectral airborne laser scanning (MS-ALS) provides information about 3D structure as well as the intensity of the reflected light and is a promising technique for acquiring forest information. Data from MS-ALS have been used for tree species classification and tree health evaluation. This paper investigates its potential for individual tree detection (ITD) when using intensity as an additional metric. To this end, rasters of height, point density, vegetation ratio, and intensity at three wavelengths were used for template matching to detect individual trees. Optimal combinations of metrics were identified for ITD in plots with different levels of canopy complexity. The F-scores for detection by template matching ranged from 0.94 to 0.73, depending on the choice of template derivation and raster generalization methods. Using intensity and point density as metrics instead of height increased the F-scores by up to 14% for the plots with the most understorey trees
Normalized Projected Red & SWIR (NPRS): A New Vegetation Index for Forest Health Estimation and Its Application on Spruce Bark Beetle Attack Detection
Due to the ongoing global warming, European spruce bark beetles has become a serious threat to the spruce forests in Europe and caused serious environmental and economic issues. This study proposes a new vegetation index, Normalized Projected Red & SWIR (NPRS), for detection of spruce bark beetle attacks. 29 healthy and 24 bark beetle attacked plots in southern Sweden were used for evaluating the classification accuracy using NPRS at early-, intermediate- and late-stage attacks. The obtained kappa coefficients were 0.73, 0.80 and 0.88, respectively. It was concluded that the NPRS is a feasible method for continuous bark beetle mapping over large areas
Classification of pine wilt disease at different infection stages by diagnostic hyperspectral bands
Pine wilt disease (PWD) is a very destructive forest disease that causes the mortality of pine. The infected trees usually die within three months, and the disease spreads fast with the long-horned beetle as the medium if the infected trees are not removed from the forest in time. Therefore, detecting the infected trees at different infection stage, especially the early infection, is crucial for preventing PWD spread. This study aims to exhibit the spectral differences of the pine needles between healthy pines and infected pines at different infection stages and reveal the diagnostic spectral bands for classifying the different infected stage trees. We collected needle samples from healthy, early-, middle-, late-stage infected trees in a Japanese pine (Pinus densiflora) forest and a Korean pine (Pinus koraiensis) forest in northern China to explore the spectral and biochemical properties differences of these four classes, and selected the sensitive bands combining competitive adaptive reweighted sampling (CARS) and successive projections algorithm (SPA). The selected bands were used for the four infection stages classification by linear discriminant analysis (LDA) algorithm. The results show that Chlorophyll a, chlorophyll b, carotenoids, and moisture content decreases with the aggravation of infection. The green (510–530 nm), red-edge (680–760 nm), and short-wave infrared (1400–1420 nm and 1925–1965 nm) bands are the sensitive bands, and the overall accuracy is 77 % and 78 % for the Japanese pine and Korean pine respectively when using these bands for classifying healthy, early-, middle-, late-stage infected trees. The results demonstrate that physiological parameters including Chlorophyll a, chlorophyll b, carotenoids, and moisture content can be used as the diagnostic parameters of PWD, and the selected sensitive spectral bands are feasible for detecting the stress symptoms of the Japanese pine and Korean pine
Early detection of forest stress from European spruce bark beetle attack, and a new vegetation index: Normalized distance red & SWIR (NDRS)
The European spruce bark beetle (Ips typographus [L.]) is one of the most damaging pest insects of European spruce forests. A crucial measure in pest control is the removal of infested trees before the beetles leave the bark, which generally happens before the end of June. However, stressed tree crowns do not show any significant color changes in the visible spectrum at this early-stage of infestation, making early detection difficult. In order to detect the related forest stress at an early stage, we investigated the differences in radar and spectral signals of healthy and stressed trees. How the characteristics of stressed trees changed over time was analyzed for the whole vegetation season, which covered the period before attacks (April), early-stage infestation ('green-attacks', May to July), and middle to late-stage infestation (August to October). The results show that spectral differences already existed at the beginning of the vegetation season, before the attacks. The spectral separability between the healthy and infested samples did not change significantly during the 'green-attack' stage. The results indicate that the trees were stressed before the attacks and had spectral signatures that differed from healthy ones. These stress-induced spectral changes could be more efficient indicators of early infestations than the 'green-attack' symptoms.In this study we used Sentinel-1 and 2 images of a test site in southern Sweden from April to October in 2018 and 2019. The red and SWIR bands from Sentinel-2 showed the highest separability of healthy and stressed samples. The backscatter from Sentinel-1 and additional bands from Sentinel-2 contributed only slightly in the Random Forest classification models. We therefore propose the Normalized Distance Red & SWIR (NDRS) index as a new index based on our observations and the linear relationship between the red and SWIR bands. This index identified stressed forest with accuracies from 0.80 to 0.88 before the attacks, from 0.80 to 0.82 in the early-stage infestation, and from 0.81 to 0.91 in middle- and late-stage infestations. These accuracies are higher than those attained by established vegetation indices aimed at 'green-attack' detection, such as the Normalized Difference Water Index, Ratio Drought Index, and Disease Stress Water Index. By using the proposed method, we highlight the potential of using NDRS with Sentinel-2 images to estimate forest vulnerability to European spruce bark beetle attacks early in the vegetation season
Exploring Common Hyperspectral Features of Early-Stage Pine Wilt Disease at Different Scales, for Different Pine Species, and at Different Regions
Pine wilt disease (PWD) is a devastating forest disease and has been listed as a quarantine pest in 52 countries around the world. Early identification of the affected trees and timely removal of them from the forest is crucial to control the spread. This study aims to explore the potential of hyperspectral data on early identification of PWD and exhibit the common spectral features, from early-infected tree crowns and needles, and from different species located in different regions. Two types of hyperspectral data were used and compared. One was using drone-based hyperspectral images with a spectral range of 400 – 1 000 nm and a resolution of 0.11 m. The images were analyzed at the individual-tree level. The other was using hyperspectral reflectance from sampled needles with a spectral range of 350 – 2 500 nm. It was used for the analysis at the needle level. We used linear discriminant analysis (LDA) to quantify the separability of spectral reflectance and first-derivative reflectance from the healthy and early-infected samples. The results showed that the red-edge bands were more sensitive than the other bands at both individual-tree and needle levels, and the first-derivative of red-edge bands achieved the best early recognition of the disease with 0.78, 0.72, and 0.85 accuracy at the individual-tree level for Chinese red pine and at the needle level for Japanese pine and Korean pine. We concluded that red-edge bands were the most informative bands with stable sensitivity at different scales and for different species
Analyzing the environmental risk factors of European spruce bark beetle damage at the local scale
The frequent outbreaks of European spruce bark beetle Ips typographus (L.) have destroyed huge amounts of Norway spruce Picea abies (L.) forests in central and Northern Europe. Identifying the risk factors and estimating the damage level is important for strategic damage control. The risk factors of forest damage by spruce bark beetles have mostly been analyzed on the landscape scale, while the in-stand risk factors have been less investigated. This study aims at exploring the local-scale risk factors in a flat area with spruce-dominated forest in southern Sweden. The investigated factors include four abiotic factors, i.e., soil wetness, solar radiation, slope gradient, and aspect, and three biotic factors, i.e., the number of deciduous trees and trees that died from attacks in previous years that remained (TreesLeft) and removed (TreesRemoved) from the forest stand. We put up 24 pheromone bags in six stands attacked by bark beetle in the previous years, resulting in different numbers of infested trees in each plot. We explored in which microenvironment a pheromone bag resulted in more colonization, the impact radius of each factor, and the necessary factors for a risk model. The environmental factors were obtained from remote sensing-based products and images. A generalized linear model (GLM) was used with the environmental factors as the explanatory variables and the damage levels as the response variables, i.e., the number of attacked trees for the plot scale, and healthy/infested for the single-tree scale. Using 50 m and 15 m radius of the environmental factors resulted in the best fit for the model at plot and individual tree scales, respectively. At those radii, the damage risk increased both at plot and individual tree level when spruce were surrounded by more deciduous trees, surrounded by dead trees that had been removed from the forest, and spruces located at the north and east slopes (315 degrees-135 degrees of aspect, > 2 degrees slope). Soil wetness, solar radiation, and remaining standing dead trees in the surrounding did not significantly impact the damage level in the microenvironment of the study area. The GLM risk model yielded an overall accuracy of 0.69 in predicting individual trees being infested or healthy. Our efforts to investigate the risk factors provide a context for wall-to-wall mapping in-stand infestation risks, using remote sensing-based data
Towards low vegetation identification: A new method for tree crown segmentation from LiDAR data based on a symmetrical structure detection algorithm (SSD)
Obtaining low vegetation data is important in order to quantify the structural characteristics of a forest. Dense three-dimensional (3D) laser scanning data can provide information on the vertical profile of a forest. However, most studies have focused on the dominant and subdominant layers of the forest, while few studies have tried to delineate the low vegetation. To address this issue, we propose a framework for individual tree crown (ITC) segmentation from laser data that focuses on both overstory and understory trees. The framework includes 1) a new algorithm (SSD) for 3D ITC segmentation of dominant trees, by detecting the symmetrical structure of the trees, and 2) removing points of dominant trees and mean shift clustering of the low vegetation. The framework was tested on a boreal forest in Sweden and the performance was compared 1) between plots with different stem density levels, vertical complexities, and tree species composition, and 2) using airborne laser scanning (ALS) data, terrestrial laser scanning (TLS) data, and merged ALS and TLS data (ALS + TLS data). The proposed framework achieved detection rates of 0.87 (ALS + TLS), 0.86 (TLS), and 0.76 (ALS) when validated with field inventory data (of trees with a diameter at breast height >= 4 cm). When validating the estimated number of understory trees by visual interpretation, the framework achieved 19%, 21%, and 39% root-mean-square error values with ALS + TLS, TLS, and ALS data, respectively. These results show that the SSD algorithm can successfully separate laser points of overstory and understory trees, ensuring the detection and segmentation of low vegetation in forest. The proposed framework can be used with both ALS and TLS data, and achieve ITC segmentation for forests with various structural attributes. The results also illustrate the potential of using ALS data to delineate low vegetation
Assessing the detectability of European spruce bark beetle green attack in multispectral drone images with high spatial- and temporal resolutions
Detecting disease- or insect-infested forests as early as possible is a classic application of remote sensing. Under conditions of climate change and global warming, outbreaks of the European spruce bark beetle (Ips typographus, L.) are threatening spruce forests and the related timber industry across Europe, and early detection of infestations is important for damage control. Infested trees without visible discoloration (green attack) have been identified using multispectral images, but how early green attacks can be detected is still unknown. This study aimed to determine when infested trees start to show an abnormal spectral response compared with healthy trees, and to quantify the detectability of infested trees during the infestation process. Pheromone bags were used to attract bark beetles in a controlled experiment, and subsequent infestations were assessed in the field on a weekly basis. In total, 977 trees were monitored, including 208 attacked trees. Multispectral drone images were obtained before and during the insect attacks, representing different periods of infestation. Individual tree crowns (ITC) were delineated by marker-controlled watershed segmentation, and the average reflectance of ITCs was analyzed based on the duration of infestation. The detectability of green attacks and driving factors were examined. We propose new Multiple Ratio Disease-Water Stress Indices (MR-DSWIs) as vegetation indices (VI) for detecting infestations. We defined a VI range of 5-95% as a healthy tree, and a VI value outside that range as an infested tree. Detection rates using multispectral images were always higher than discoloration rates observed in the field, and the newly proposed MR-DSWIs detected more infested trees than the established VIs. Infestations were detectable at 5 and 10 weeks after an attack at a rate of 15% and 90%, respectively, from the multispectral drone images. Weeks 5-10 of infestation therefore represent a suitable period for using the proposed methodology to map infestation at an early stage
Large-scale wall-to-wall mapping of bark beetle damage and forest practices using the distance red swir index and operational harvester data
Satellite-based inventories of bark beetle attacks are increasingly used for detecting and monitoring infested forest at the landscape scale. The Normalized Distance Red & SWIR index is one of few indices that have shown higher accuracies than commonly used vegetation indices. In this study, the temporal changes of the distance red swir (Delta DRS) index were analyzed, validated and applied to multi-temporal Sentinel-2 images covering one tile of 110 x 110 km(2). The main purpose was to assess the applicability of a new Delta DRS vegetation index to detect spruce forest after bark beetle (Ips typographus) attacks. Harvester data from a private forest company were used to validate the method. The normalized DRS index has previously been developed and tested at test site level, while this study explored and demonstrated the use of Delta DRS in an applied context on a larger scale. Water and chlorophyll induced changes and different disturbances were effectively identified across the landscape. A linear-discriminant analysis was used to classify 274 clusters as attacked and healthy forest, with an overall accuracy of 78%. The largest Delta DRS values in our study (>0.06) corresponded well to clear-cuts, and all 172 clear-cuts were correctly classified. We conclude that the Delta DRS index has a potential to map vegetation changes related to water and chlorophyll changes in the Scandinavian forests and that it can be useful to identify bark beetle-infested forest within 1 year after the attacks and clear-cuts
Potential of mapping forest damage from remotely sensed data
Remote sensing is an efficient tool for mapping, monitoring, and assessing forest damage and the risk of damage. This report presents ongoing research on those topics with preliminary results as well as research planned by the Department of Forest Resource Management, SLU in UmeĂĄ, in the near future. The damage types include spruce bark beetle attacks, storm damage, and forest fire. The report also outlines proposed continued research in the area and possible collaborations within and outside SLU