Additional file 30: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Table S20. The expression profiles of some genes from other families discussed in this study. (XLS 181 kb

Additional file 11: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Figure S6. Arrangement of secondary structure elements in AtMYC3 (5–242). Secondary structure elements overlaid on the sequence alignment of bHLH N-terminal proteins belonging to three subfamilies III(d + e), XIII and IIIf. (PDF 517 kb

Additional file 2: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Table S2. A table shows 180 new names of wheat bHLHs side by side with previous ones. (XLS 73 kb

Additional file 14: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Table S8. The TPM values of 209 TabHLHs in 15 tissues. (XLS 85 kb

Additional file 7: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Figure S3. Phylogenetic relationships and gene structure features of TabHLHs. The phylogenetic tree was constructed with MEGA 6.0 based on a multiple alignment of 571 wheat bHLH domain sequences. For better visualization and comparison, all introns were displayed in the same length. (PDF 5746 kb

Additional file 32: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Figure S12. Phylogenetic relationship and motif compositions of TaJAZs. a. The phylogenetic tree of TaJAZs constructed using MEGA by the NJ method with 100 bootstrap replicates. b. Domain distribution of TaJAZs was investigated using the MEME web server. c. The consensus sequence of TIFY and Jas motif from TaJAZs. (PDF 414 kb

Additional file 4: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Figure S1. Amino acid sequence alignment of 1154 Arabidopsis, rice, wheat and maize bHLH domains. The red triangles at the bottom indicate the 31 conserved residues. The loop region has been shortened to better visualize the alignment results. (PDF 358 kb

Additional file 19: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Table S11. The TPM values of 80 TabHLHs under drought stress. (XLS 39 kb

Additional file 29: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Table S19. List of the “guide genes” of nine subnetwork, and their related information. (XLS 37 kb

Additional file 1: of Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat

Table S1. List of 1154 bHLHs from Arabidopsis, rice, maize and wheat and their related information. (XLS 509 kb