A Meta-Theory of Boundary Detection Benchmarks

Human labeled datasets, along with their corresponding evaluation algorithms, play an important role in boundary detection. We here present a psychophysical experiment that addresses the reliability of such benchmarks. To find better remedies to evaluate the performance of any boundary detection algorithm, we propose a computational framework to remove inappropriate human labels and estimate the intrinsic properties of boundaries.Comment: NIPS 2012 Workshop on Human Computation for Science and Computational Sustainabilit

Demystifying Neural Style Transfer

Neural Style Transfer has recently demonstrated very exciting results which catches eyes in both academia and industry. Despite the amazing results, the principle of neural style transfer, especially why the Gram matrices could represent style remains unclear. In this paper, we propose a novel interpretation of neural style transfer by treating it as a domain adaptation problem. Specifically, we theoretically show that matching the Gram matrices of feature maps is equivalent to minimize the Maximum Mean Discrepancy (MMD) with the second order polynomial kernel. Thus, we argue that the essence of neural style transfer is to match the feature distributions between the style images and the generated images. To further support our standpoint, we experiment with several other distribution alignment methods, and achieve appealing results. We believe this novel interpretation connects these two important research fields, and could enlighten future researches.Comment: Accepted by IJCAI 201

The Secrets of Salient Object Segmentation

In this paper we provide an extensive evaluation of fixation prediction and salient object segmentation algorithms as well as statistics of major datasets. Our analysis identifies serious design flaws of existing salient object benchmarks, called the dataset design bias, by over emphasizing the stereotypical concepts of saliency. The dataset design bias does not only create the discomforting disconnection between fixations and salient object segmentation, but also misleads the algorithm designing. Based on our analysis, we propose a new high quality dataset that offers both fixation and salient object segmentation ground-truth. With fixations and salient object being presented simultaneously, we are able to bridge the gap between fixations and salient objects, and propose a novel method for salient object segmentation. Finally, we report significant benchmark progress on three existing datasets of segmenting salient objectsComment: 15 pages, 8 figures. Conference version was accepted by CVPR 201

Understanding Convolution for Semantic Segmentation

Recent advances in deep learning, especially deep convolutional neural networks (CNNs), have led to significant improvement over previous semantic segmentation systems. Here we show how to improve pixel-wise semantic segmentation by manipulating convolution-related operations that are of both theoretical and practical value. First, we design dense upsampling convolution (DUC) to generate pixel-level prediction, which is able to capture and decode more detailed information that is generally missing in bilinear upsampling. Second, we propose a hybrid dilated convolution (HDC) framework in the encoding phase. This framework 1) effectively enlarges the receptive fields (RF) of the network to aggregate global information; 2) alleviates what we call the "gridding issue" caused by the standard dilated convolution operation. We evaluate our approaches thoroughly on the Cityscapes dataset, and achieve a state-of-art result of 80.1% mIOU in the test set at the time of submission. We also have achieved state-of-the-art overall on the KITTI road estimation benchmark and the PASCAL VOC2012 segmentation task. Our source code can be found at https://github.com/TuSimple/TuSimple-DUC .Comment: WACV 2018. Updated acknowledgements. Source code: https://github.com/TuSimple/TuSimple-DU

Boundary Detection Benchmarking: Beyond F-Measures

For an ill-posed problem like boundary detection, human labeled datasets play a critical role. Compared with the active research on finding a better boundary detector to refresh the performance record, there is surprisingly little discussion on the boundary detection benchmark itself. The goal of this paper is to identify the potential pitfalls of today's most popular boundary benchmark, BSDS 300. In the paper, we first introduce a psychophysical experiment to show that many of the "weak" boundary labels are unreliable and may contaminate the benchmark. Then we analyze the computation of f-measure and point out that the current benchmarking protocol encourages an algorithm to bias towards those problematic "weak" boundary labels. With this evidence, we focus on a new problem of detecting strong boundaries as one alternative. Finally, we assess the performances of 9 major algorithms on different ways of utilizing the dataset, suggesting new directions for improvements

Covert cerebrospinal fluid dynamics dysfunction: evolution from conventional to innovative therapies

Cerebrospinal fluid (CSF) dynamics disorders are intricately linked to diverse neurological pathologies, though they usually are mild and covert. Contemporary insights into glymphatic system function, particularly the CSF transport, drainage, and its role in clearing metabolic waste and toxic substances in both normal and pathological states, and the pivotal role of aquaporin-4 (AQP4) in CSF-interstitial fluid (ISF) exchange, have established novel theoretical frameworks of subclinical CSF dynamics dysfunction, and have promoted the development of non-surgical therapeutic approaches for them simultaneously. This review comprehensively analyzes the advancement of non-surgical interventions for CSF dynamics disorders, emphasizing the transition from established methodologies to innovative approaches. Current non-surgical treatment strategies primarily encompass three directions: pharmacological therapy, physical therapy, and biological regulation therapy. In terms of pharmacological interventions, developments from traditional diuretics to novel small-molecule drugs show promising therapeutic potential. In physical therapy, innovative techniques such as lower body negative pressure, transcranial magnetic stimulation, and vagus nerve stimulation have provided new options for clinical practice. Meanwhile, biological regulation therapy, exemplified by recombinant VEGF-C administration, has established novel therapeutic paradigms. These therapeutic strategies have demonstrated potential in improving CSF dynamics and enhancing CSF waste elimination. Future research should focus on developing individualized treatment protocols, elucidating of therapeutic mechanisms, and assessing longitudinal outcomes. This will facilitate the development of more precise therapeutic strategies and exploration of optimized multimodal treatment combinations in handling the so-called convert CSF dynamics dysfunction

Detection and localization of citrus fruit based on improved You Only Look Once v5s and binocular vision in the orchard

Intelligent detection and localization of mature citrus fruits is a critical challenge in developing an automatic harvesting robot. Variable illumination conditions and different occlusion states are some of the essential issues that must be addressed for the accurate detection and localization of citrus in the orchard environment. In this paper, a novel method for the detection and localization of mature citrus using improved You Only Look Once (YOLO) v5s with binocular vision is proposed. First, a new loss function (polarity binary cross-entropy with logit loss) for YOLO v5s is designed to calculate the loss value of class probability and objectness score, so that a large penalty for false and missing detection is applied during the training process. Second, to recover the missing depth information caused by randomly overlapping background participants, Cr-Cb chromatic mapping, the Otsu thresholding algorithm, and morphological processing are successively used to extract the complete shape of the citrus, and the kriging method is applied to obtain the best linear unbiased estimator for the missing depth value. Finally, the citrus spatial position and posture information are obtained according to the camera imaging model and the geometric features of the citrus. The experimental results show that the recall rates of citrus detection under non-uniform illumination conditions, weak illumination, and well illumination are 99.55%, 98.47%, and 98.48%, respectively, approximately 2–9% higher than those of the original YOLO v5s network. The average error of the distance between the citrus fruit and the camera is 3.98 mm, and the average errors of the citrus diameters in the 3D direction are less than 2.75 mm. The average detection time per frame is 78.96 ms. The results indicate that our method can detect and localize citrus fruits in the complex environment of orchards with high accuracy and speed. Our dataset and codes are available at https://github.com/AshesBen/citrus-detection-localization

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

This paper describes outcomes of the 2019 Cryo-EM Model Challenge. The goals were to (1) assess the quality of models that can be produced from cryogenic electron microscopy (cryo-EM) maps using current modeling software, (2) evaluate reproducibility of modeling results from different software developers and users and (3) compare performance of current metrics used for model evaluation, particularly Fit-to-Map metrics, with focus on near-atomic resolution. Our findings demonstrate the relatively high accuracy and reproducibility of cryo-EM models derived by 13 participating teams from four benchmark maps, including three forming a resolution series (1.8 to 3.1 Å). The results permit specific recommendations to be made about validating near-atomic cryo-EM structures both in the context of individual experiments and structure data archives such as the Protein Data Bank. We recommend the adoption of multiple scoring parameters to provide full and objective annotation and assessment of the model, reflective of the observed cryo-EM map density