1 research outputs found
Perturbation Approach for Computing Infrared Spectra of the Local Mode of Probe Molecules
Linear
and two-dimensional infrared (IR) spectroscopy of site-specific
probe molecules provides an opportunity to gain a molecular-level
understanding of the local hydrogen-bonding network, conformational
dynamics, and long-range electrostatic interactions in condensed-phase
and biological systems. A challenge in computation is to determine
the time-dependent vibrational frequencies that incorporate explicitly
both nuclear quantum effects of vibrational motions and an electronic
structural representation of the potential energy surface. In this
paper, a nuclear quantum vibrational perturbation (QVP) method is
described for efficiently determining the instantaneous vibrational
frequency of a chromophore in molecular dynamics simulations. Computational
efficiency is achieved through the use of (a) discrete variable representation
of the vibrational wave functions, (b) a perturbation theory to evaluate
the vibrational energy shifts due to solvent dynamic fluctuations,
and (c) a combined QM/MM potential for the systems. It was found that
first-order perturbation is sufficiently accurate, enabling time-dependent
vibrational frequencies to be obtained on the fly in molecular dynamics.
The QVP method is illustrated in the mode-specific linear and 2D-IR
spectra of the H–Cl stretching frequency in the HCl–water
clusters and the carbonyl stretching vibration of acetone in aqueous
solution. To further reduce computational cost, a hybrid strategy
was proposed, and it was found that the computed vibrational spectral
peak position and line shape are in agreement with experimental results.
In addition, it was found that anharmonicity is significant in the
H–Cl stretching mode, and hydrogen-bonding interactions further
enhance anharmonic effects. The present QVP method complements other
computational approaches, including path integral-based molecular
dynamics, and represents a major improvement over the electrostatics-based
spectroscopic mapping procedures