MOESM1 of Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep

Additional file 1: Table S1. Summary statistics for the SNPs, average minor allele frequency and heterozygosity. Table S2. Average linkage disequilibrium (r2) between adjacent markers on the autosomes (OAR). Table S3. Average linkage disequilibrium (D’) between adjacent markers on the autosomes (OAR). Table S4. Chromosome-wise average linkage disequilibrium (D’) for each population studied. Table S5. Chromosome-wise average linkage disequilibrium (r2) for each population studied. Table S6. Summary of the chromosome-wise haplotype analysis. Table S7. Range of inbreeding coefficients for each population studied. Table S8. Mean linkage disequilibrium in the five populations at varying map distances. Table S9. List of the genes located in the region between 49.2 and 51.2 Mb on OAR15

MOESM2 of Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep

Additional file 2: Figure S1. Distribution of minor allele frequency (MAF) for each population studied. The percentage of SNP is plotted for each frequency bin. Figure S2. Average D' values for each population

Additional file 1: Table S1. of Genome-wide association study of body weight in Australian Merino sheep reveals an orthologous region on OAR6 to human and bovine genomic regions affecting height and weight

Number of SNPs before and after quality control and average distances between adjacent SNPs on each chromosome. (DOCX 16 kb

Additional file 3: Table S3. of Genome-wide association study of body weight in Australian Merino sheep reveals an orthologous region on OAR6 to human and bovine genomic regions affecting height and weight

Percentages of genetic variance explained by each chromosome. This table presents the percentages of genetic variance explained by each chromosome obtained by fitting all chromosomes simultaneously in the GCTA software. (DOCX 19 kb

Additional file 2: Table S2. of Genome-wide association study of body weight in Australian Merino sheep reveals an orthologous region on OAR6 to human and bovine genomic regions affecting height and weight

The 39 SNPs that have a significant association with body weight in 1743 Merino sheep. This table presents the chromosomal positions of 39 genome-wide significant SNPs with MAF, P-values as well as the proportion of genetic variance and allele substitution effects that can be attributed to each SNP. (DOCX 23 kb

Additional file 12: of Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

All significant SNP identified for marine maturation, using only male fish. The table shows physically co-located genes and their distance from the associated loci (in bp). Gene identifiers, symbol and names are provided. (XLSX 11 kb

Additional file 10: of Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

Genotype classes by maturation status for Ssa10 SNP AX-87354755. The distribution of genotype classes are shown separately within males and females in both matured and non-matured animals. (TIF 159 kb

Additional file 4: of Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

All significant SNP identified for freshwater maturation, using both male and female fish. The table shows physically co-located genes and their distance from the associated loci (in bp). Gene identifiers, symbol and names are provided. (XLSX 10 kb

Additional file 11: of Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

Genotype classes by maturation status for Ssa11 SNP AX-96411005. The distribution of genotype classes are shown separately within males and females in both matured and non-matured animals. (TIF 162 kb

Additional file 9: of Polygenic and sex specific architecture for two maturation traits in farmed Atlantic salmon

Sex specific behaviour at two SNP for both FMAT and MMAT. The table shows the strength of association, effect size and proportion of genetic variance explained in analysis using all animals, males or females alone. (DOCX 18 kb