Additional file 4: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

The common DEGs involved in two pathways (ECM-receptor interaction and Focal adhesion) in this study. (XLS 40 kb

Additional file 5: of Identification of differentially expressed genes and pathways for intramuscular fat metabolism between breast and thigh tissues of chickens

The specific primers for q-PCR in this study. (XLS 57 kb

Additional file 4: of Decreased testosterone levels after caponization leads to abdominal fat deposition in chickens

The enriched pathways based on the 872 DEGs. (XLS 61 kb

Genotypes for the association panel

Genotypes for the association pane

Additional file 1: of Decreased testosterone levels after caponization leads to abdominal fat deposition in chickens

872 DEGs between the capon and the control chicken groups. (XLS 311 kb

Additional file 5: of Decreased testosterone levels after caponization leads to abdominal fat deposition in chickens

Figure S1. The PPAR signaling pathway (JPG 109 kb

Additional file 2: of Decreased testosterone levels after caponization leads to abdominal fat deposition in chickens

The enriched the GO-terms in the BP category based on 872 DEGs. (XLS 50 kb

Additional file 3: of Decreased testosterone levels after caponization leads to abdominal fat deposition in chickens

The 86 DEGs related to lipid metabolism using GO-terms analysis based on a total of 872 DEGs 45 up-regulated and 41 down-regulated. (XLS 75 kb

Decreased expression of <i>TLR4</i>, <i>TLR21</i> and <i>TLR2-1</i> genes in susceptible chickens.

<p>The relative expression of <i>TLR4</i>, <i>TLR21</i>, <i>TLR2-1</i> and <i>TLR2-2</i> in leukocytes of susceptible (□ ---- □) and resistant (⧫——⧫) chickens at 8 h, 16 h, 24 h, 3 d, and 12 d after infection with <i>S.enteritidis</i> is shown. Relative values, normalized using <i>β-actin</i> mRNA levels and the average expression levels in both groups at 0 h, are shown. The data are means (SD shown by the vertical bars) of 6 birds (*P<0.05; **P<0.01). TPI is time post-infection.</p

Primers for methylation detection.

<p>Primers for methylation detection.</p