29 research outputs found
The genotype files of multiple birch species in Eurasia
Tsuda_Betula_sampleInfo:
This file includes a list of population code, name, country, longitude (E) and latitude (N) which are corresponding to "Tsuda_Betula1594_7loc_STRUCTURE.txt".
Tsuda_Betula_TetDip_FSTAT:
The genotype data for software FSTAT.
To analyze diploid-tetraploid combined data keeping allele frequencies, tetraploid genotypes were treated as two diploid individuals in FSTAT.
Tsuda_Betula1594_7loc_STRUCTURE:
The input file of STRUCTURE analysis based on 7loci of 1594 individuals.
Missing data is coded as -9.
Betula_Betula877_18loc:
The input file of STRUCTURE analysis based on 18loci of 877 diploid individuals.
Missing data is coded as -9.
Tsuda_Betula_4spABC:
The input fie of DIYABC based on 18 loci in 4 species
DATA : Abies data
<p>BlastX and functional annotation (sheet 1), SNPs design (sheet 2) and SNPs Genotyping* (sheet 3).</p>
<p>*<em>Abies alba</em> and<em> A. cephalonica</em> populations (10 altitudinal gradients accross Europe from French Pyrennées to Greece) / 273 SNPs</p
The genotype files of multiple birch species in Eurasia
Tsuda_Betula_sampleInfo:
This file includes a list of population code, name, country, longitude (E) and latitude (N) which are corresponding to "Tsuda_Betula1594_7loc_STRUCTURE.txt".
Tsuda_Betula_TetDip_FSTAT:
The genotype data for software FSTAT.
To analyze diploid-tetraploid combined data keeping allele frequencies, tetraploid genotypes were treated as two diploid individuals in FSTAT.
Tsuda_Betula1594_7loc_STRUCTURE:
The input file of STRUCTURE analysis based on 7loci of 1594 individuals.
Missing data is coded as -9.
Betula_Betula877_18loc:
The input file of STRUCTURE analysis based on 18loci of 877 diploid individuals.
Missing data is coded as -9.
Tsuda_Betula_4spABC:
The input fie of DIYABC based on 18 loci in 4 species
AppendixS1
Blast results, GO annotations, GO annotation terms, associated microsatellites (including motif, primer and product size for each SSR) for each of the contigs and for both tax
FASTAQ file for Echinogammarus veneris
FASTAQ file for Echinogammarus veneri