Data from Semenov et al. 2018. Specimen information, plumage index and microsatellite genotypes

Sampling information, plumage indices and microsatellite genotypes for 393 White wagtail (Motacilla alba) specimens

Simulations, sampling and allele frequencies

Simulations, sampling and allele frequencie

scordato_BARS_metadata

Metadata for genotype estimates. File contains 533 rows corresponding to the genotype file, with individual IDs, sampling locations, GPS coordinates, and taxon classifications with corresponding color codes for plotting

scordato_BARS_genotype_estimates

Individual genotype estimates for each individual barn swallow (n=533) at each locus (n=23,251). Genotypes are continuous values derived from Bayesian estimates of genotype. They can be rounded to 0, 1, or 2 to replicated analyses that require genotype calls (see supporting information for paper

Species trees based on all 3 loci (left) and two nuclear loci (right).

<p>Numbers next to branches show their posterior probability. Gray bars next to nodes indicate their 95% HPD interval for the node age. Scale below each tree indicates time in million years (Ma).</p

SNP dataset

Data for 19,437 SNP loci and 276 individuals in allelic format used for ancestry analyses. Individuals IDs are voucher numbers (see Sampling, genomic and morphological data used for analyses.xlsx for details

Divergence time estimates and their 95% HPD intervals for selected nodes.

<p>Divergence time estimates and their 95% HPD intervals for selected nodes.</p

An allele network and species tree based on RHOI1 sequences.

<p>MtDNA clades are identified by names from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0087570#pone-0087570-g002" target="_blank">Fig. 2</a>. Numbers next to branches show their posterior probability. Gray bars next to nodes indicate their 95% HPD interval for the node age. Scale below each tree indicates time in million years (Ma).</p

Phylogenetic tree of mtDNA ND2 haplotypes (left) and the species tree based on ND2 sequences (right).

<p>Palearctic clades are identified by subspecific names. Nearctic clades are identified by letters (A - E) due to overlap of their ranges. Numbers next to branches show their posterior probability. Gray bars next to nodes indicate their 95% HPD interval for the node age. Scale below each tree indicates time in million years (Ma).</p

Sampling localities of <i>Eremophila</i> larks.

<p>MtDNA clades sampled in each locality are identified by clade names from <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0087570#pone-0087570-g002" target="_blank">Fig. 2</a>. The numbers following Nearctic clade names indicate their sample sizes. Dark gray areas show ranges of the currently recognized horned lark (solid) and Temminck's lark (striped). The following sources for lark distribution data were used to create this map: <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0087570#pone.0087570-Beason1" target="_blank">[20]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0087570#pone.0087570-Stepanyan1" target="_blank">[21]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0087570#pone.0087570-deJuana1" target="_blank">[53]</a>, <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0087570#pone.0087570-Mullarney1" target="_blank">[54]</a>.</p