MOESM2 of Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid

Additional file 2. Genome browser view of remarkable autosomal and X-linked regions displaying sex-specific and non-specific FAIRE-seq and RNA-seq signal. A, D: female-specific regions around the genes ACYPI003071 (uncharacterized protein) and ACYPI001644 (cuticular protein 44). B, E: male-specific regions around the genes ACYPI080359 (uncharacterized protein) and ACYPI081672 (uncharacterized protein). C, F: regions in common between males and females for the genes ACYPI000061 (ATP synthase subunit beta) and ACYPI006656 (molybdate-anion transporter). The RNA-seq and FAIRE-seq signals have been made equal between males and females for each region

Additional file 3: of Hypoxia response in Arabidopsis roots infected by Plasmodiophora brassicae supports the development of clubroot

Effect of CPM normalization on genes expression profiles. Boxplots representing the expression distribution of the expressed genes (filtered) before and after CPM normalization using TMM method for Normalization Factor calculation. After normalization, the distribution of genes expression of the 24 analyzed samples is similar. (PDF 373 kb

Additional file 1: of Hypoxia response in Arabidopsis roots infected by Plasmodiophora brassicae supports the development of clubroot

Methods used for the analysis of the RNAseq dataset E-MTAB-4176 (from reference [19]). (PDF 44 kb