20 research outputs found
A Frontier Orbital Study with ab Initio Molecular Dynamics of the Effects of Solvation on Chemical Reactivity: Solvent-Induced Orbital Control in FeO-Activated Hydroxylation Reactions
Solvation effects on chemical reactivity
are often rationalized
using electrostatic considerations: the reduced stabilization of the
transition state results in higher reaction barriers and lower reactivity
in solution. We demonstrate that the effect of solvation on the relative
energies of the frontier orbitals is equally important and may even
reverse the trend expected from purely electrostatic arguments. We
consider the H abstraction reaction from methane by quintet [EDTAH<sub><i>n</i></sub>·FeO]<sup>(<i>n</i>−2)+</sup>, (<i>n</i> = 0–4) complexes in the gas phase and
in aqueous solution, which we examine using ab initio thermodynamic
integration. The variation of the charge of the complex with the protonation
of the EDTA ligand reveals that the free energy barrier in gas phase
increases with the negative charge, varying from 16 kJ mol<sup>–1</sup> for [EDTAH<sub>4</sub>·FeO]<sup>2+</sup> to 57 kJ mol<sup>–1</sup> for [EDTAH<sub><i>n</i></sub>·FeO]<sup>2–</sup>. In aqueous solution, the barrier for the +2 complex (38 kJ mol<sup>–1</sup>) is higher than in gas phase, as predicted by purely
electrostatic arguments. For the negative complexes, however, the
barrier is lower than in gas phase (e.g., 45 kJ mol<sup>–1</sup> for the −2 complex). We explain this increase in reactivity
in terms of a stabilization of the virtual 3σ* orbital of FeO<sup>2+</sup>, which acts as the dominant electron acceptor in the H-atom
transfer from CH<sub>4</sub>. This stabilization originates from the
dielectric screening caused by the reorientation of the water dipoles
in the first solvation shell of the charged solute, which stabilizes
the acceptor orbital energy for the −2 complex sufficiently
to outweigh the unfavorable electrostatic destabilization of the transition-state
relative to the reactants in solution
Ligand Field Effects and the High Spin–High Reactivity Correlation in the H Abstraction by Non-Heme Iron(IV)–Oxo Complexes: A DFT Frontier Orbital Perspective
The electronic structure explanation
of H abstraction from aliphatic
CH bonds by the ferryl ion, Fe<sup>IV</sup>O<sup>2+</sup>, has received
a great deal of attention. We review the insights that have been gained,
in particular into the effect of the spin state. However, we emphasize
that the spin state is dictated by the field of the ligands coordinated
to the Fe ion and is but one of the effects of the ligand field. Using
the model systems [FeO(H<sub>2</sub>O)<sub>5</sub>]<sup>2+</sup>,
representative of the weak field situation, and [FeO(H<sub>2</sub>O)<sub><i>ax</i></sub>(NH<sub>3</sub>)<sub>4</sub>]<sup>2+</sup>, representative of a strong (equatorial) field, we distinguish
the effect of spin state (high spin (quintet) versus low spin (triplet))
from other effects, notably the orbital interaction (pushing up) effect
of the ligand donor orbitals and the electron-donating ability of
the ligands, directly affecting the charge on the FeO group. We describe
the changes in electronic structure during the reaction with the help
of elementary orbital interaction diagrams involving the frontier
orbitals. These give a straightforward electronic structure picture
of the reaction but do not provide support for the description of
the reactivity of FeO<sup>2+</sup> as starting with oxyl radical formation
Is [FeO]<sup>2+</sup> the Active Center Also in Iron Containing Zeolites? A Density Functional Theory Study of Methane Hydroxylation Catalysis by Fe-ZSM-5 Zeolite
Arguments are put forward that the active α-oxygen site in the Fe-ZSM-5 catalyst consists of the FeO2+ moiety. It is demonstrated that this zeolite site for FeO2+ indeed obeys the design principles for high reactivity of the FeO2+ moiety proposed earlier: a ligand environment consisting of weak equatorial donors (rather oxygen based than nitrogen based) and very weak or absent trans axial donor. The α-oxygen site would then owe its high reactivity to the same electronic structure features that lends FeO2+ its high activity in biological systems, as well as in the classical Fenton chemistry
Synergism of Porphyrin-Core Saddling and Twisting of<i> meso</i>-Aryl Substituents
The structural chemistry of meso-aryl-substituted porhyrins has uncovered a bewildering variety of macrocycle
distortions. Saddling angles range up to 40°, while the plane of the phenyl groups at the meso positions may
be anywhere between perpendicular to the porphyrin plane (θ = 90°) and tilted to quite acute angles (θ =
30° or even less). These two distortions appear to be correlated. This has naturally been explained by steric
hindrance: when the phenyls rotate toward the porphyrin plane, for instance, coerced by packing forces, the
pyrrole rings can alleviate the steric hindrance by tilting away to a saddled conformation. We demonstrate,
however, that the two motions are intrinsically coupled by electronic factors and are correlated even in the
absence of external forces. A saddling motion makes it sterically possible for the phenyl rings to rotate toward
the porphyrin plane, which will always happen because of increasingly favorable π-conjugation interaction
with smaller angles θ. The considerable energy lowering due to π conjugation counteracts the energy cost of
the saddling, making the concerted saddling/rotation motion very soft. Unsubstituted meso-aryl porphyrins
just do not distort, but an additional driving force may tip the balance in favor of the combined distortion
motion. Internal forces having this effect are repulsion of the four hydrogens that occupy the central hole of
the ring in porphyrin diacids but also steric repulsion in peripherally crowded porphyrins. These findings
lead to a clarification and systematization of the observed structural variety, which indeed shows a remarkable
correlation between saddling and phenyl ring tilting
Cu(bipy)<sup>2+</sup>/TEMPO-Catalyzed Oxidation of Alcohols: Radical or Nonradical Mechanism?
In the oxidation of alcohols with TEMPO as catalyst,
the substrate
has alternatively been postulated to be oxidized but uncoordinated
TEMPO<sup>+</sup> (Semmelhack) or Cu-coordinated TEMPO<sup>•</sup> radical (Sheldon). The reaction with the Cu(bipy)<sup>2+</sup>/TEMPO
cocatalyst system has recently been claimed, on the basis of DFT calculations,
to not be a radical reaction but to be best viewed as electrophilic
attack on the alcohol C–H<sub>α</sub> bond by <i>coordinated</i> TEMPO<sup>+</sup>. This mechanism combines elements
of the Semmelhack mechanism (oxidation of TEMPO to TEMPO<sup>+</sup>) and the Sheldon proposal (“in the coordination sphere of
Cu”). The recent proposal has been challenged on the basis
of DFT calculations with a different functional, which were reported
to lead to a radical mechanism. We carefully examine the results for
the two functionals and conclude from both the calculated energetics
and from an electronic structure analysis that the results of the
two DFT functionals are consistent and that both lead to the proposed
mechanism with TEMPO not acting as radical but as (coordinated) positive
ion
Nucleophilic or Electrophilic Phosphinidene Complexes ML<i><sub>n</sub></i>PH; What Makes the Difference?
Density functional studies, based on the local density approximation including nonlocal corrections
for correlation and exchange self-consistently, have been carried out for the equilibrium structures of the
phosphinidene transition metal complexes MLnPH, with M = Ti, Zr, Hf, V, Nb, Ta, Cr, Mo, W, Fe, Ru, Os,
Co, Rh, Ir and L = CO, PH3, Cp. The chemical reactivity of the transition metal-stabilized phosphinidene
P−R is influenced by its spectator ligands L. Ligands with strong σ-donor capabilities on the metal increase
the electron density on the phosphorus atom, raise the π*-orbital energy, and enhance its nucleophilicity.
Spectator ligands with strong π-acceptor capabilities lower the charge concentration on P and stabilize the
π*-orbital, which results in a higher affinity for electron-rich species. The MLnPH bond is investigated
using a bond energy analysis in terms of electrostatic interaction, Pauli repulsion, and orbital interaction.
A symmetry decomposition scheme affords a quantitative estimate of the σ- and π-bond strengths. It is
shown that the investigated phosphinidenes are strong π-acceptors and even stronger σ-donors. The metal−phosphinidene interaction increases on going from the first to the second- and third-row transition metals
On the Equivalence of Conformational and Enantiomeric Changes of Atomic Configuration for Vibrational Circular Dichroism Signs
We study systematically the vibrational circular dichroism (VCD)
spectra of the conformers of a simple chiral molecule, with one chiral
carbon and an “achiral” alkyl substituent of varying
length. The vibrational modes can be divided into a group involving
the chiral center and its direct neighbors and the modes of the achiral
substituent. Conformational changes that consist of rotations around
the bond from the next-nearest neighbor to the following carbon, and
bond rotations further in the chain, do not affect the modes around
the chiral center. However, conformational changes within the chiral
fragment have dramatic effects, often reversing the sign of the rotational
strength. The equivalence of the effect of enantiomeric change of
the atomic configuration and conformational change on the VCD sign
(rotational strength) is studied. It is explained as an effect of
atomic characteristics, such as the nuclear amplitudes in some vibrational
modes as well as the atomic polar and axial tensors, being to a high
degree determined by the local topology of the atomic configuration.
They reflect the local physics of the electron motions that generate
the chemical bonds rather than the overall shape of the molecule
Understanding Solvent Effects in Vibrational Circular Dichroism Spectra: [1,1′-Binaphthalene]-2,2′-diol in Dichloromethane, Acetonitrile, and Dimethyl Sulfoxide Solvents
We present a combined experimental and computational
investigation
of the vibrational absorption (VA) and vibrational circular dichroism
(VCD) spectra of [1,1′-binaphthalene]-2,2′-diol. First,
the sensitive dependence of the experimental VA and VCD spectra on
the solvent is demonstrated by comparing the experimental spectra
measured in CH<sub>2</sub>Cl<sub>2</sub>, CD<sub>3</sub>CN, and DMSO-<i>d</i><sub>6</sub> solvents. Then, by comparing calculations
performed for the isolated solute molecule to calculations performed
for molecular complexes formed between solute and solvent molecules,
we identify three main types of perturbations that affect the shape
of the VA and VCD spectra when going from one solvent to another.
These sources of perturbations are (1) perturbation of the Boltzmann
populations, (2) perturbation of the electronic structure, and (3)
perturbation of the normal modes
Relativistic DFT Calculations of the Paramagnetic Intermediates of [NiFe] Hydrogenase. Implications for the Enzymatic Mechanism
Relativistic DFT Calculations of the Paramagnetic
Intermediates of [NiFe] Hydrogenase. Implications
for the Enzymatic Mechanis
Secondary Kinetic Peak in the Kohn–Sham Potential and Its Connection to the Response Step
We consider a prototypical 1D model Hamiltonian for a
stretched
heteronuclear molecule and construct individual components of the
corresponding KS potential, namely, the kinetic, the N – 1, and the conditional potentials. These components show
very special features, such as peaks and steps, in regions where the
density is drastically low. Some of these features are quite well-known,
whereas others, such as a secondary peak in the kinetic potential
or a second bump in the conditional potential, are less or not known
at all. We discuss these features building on the analytical model
treated in Giarrusso et al. J. Chem. Theory Comput. 2018, 14, 4151. In particular, we provide an explanation
for the underlying mechanism which determines the appearance of both
peaks in the kinetic potential and elucidate why these peaks delineate
the region over which the plateau structure, due to the N – 1 potential, stretches. We assess the validity of the Heitler–London Ansatz at large but finite internuclear distance, showing
that, if optimal orbitals are used, this model is an excellent approximation
to the exact wave function. Notably, we find that the second natural
orbital presents an extra node very far out on the side of the more
electronegative atom
