Reversible DNA micro-patterning using the fluorous effect

We describe a new method for the immobilisation of DNA into defined patterns with sub-micron resolution, using the fluorous effect. The method is fully reversible via a simple solvent wash, allowing the patterning, regeneration and re-patterning of surfaces with no degradation in binding efficiency following multiple removal/attachment cycles of different DNA sequences

The Plant Ontology: A common reference ontology for plants

The Plant Ontology (PO) (http://www.plantontology.org) (Jaiswal et al., 2005; Avraham et al., 2008) was designed to facilitate cross-database querying and to foster consistent use of plant-specific terminology in annotation. As new data are generated from the ever-expanding list of plant genome projects, the need for a consistent, cross-taxon vocabulary has grown. To meet this need, the PO is being expanded to represent all plants. This is the first ontology designed to encompass anatomical structures as well as growth and developmental stages across such a broad taxonomic range. While other ontologies such as the Gene Ontology (GO) (The Gene Ontology Consortium, 2010) or Cell Type Ontology (CL) (Bard et al., 2005) cover all living organisms, they are confined to structures at the cellular level and below. The diversity of growth forms and life histories within plants presents a challenge, but also provides unique opportunities to study developmental and evolutionary homology across organisms

Analytic and Numerical Study of Preheating Dynamics

We analyze the phenomenon of preheating,i.e. explosive particle production due to parametric amplification of quantum fluctuations in the unbroken case, or spinodal instabilities in the broken phase, using the Minkowski space $O(N)$ vector model in the large $N$ limit to study the non-perturbative issues involved. We give analytic results for weak couplings and times short compared to the time at which the fluctuations become of the same order as the tree level,as well as numerical results including the full backreaction.In the case where the symmetry is unbroken, the analytic results agree spectacularly well with the numerical ones in their common domain of validity. In the broken symmetry case, slow roll initial conditions from the unstable minimum at the origin, give rise to a new and unexpected phenomenon: the dynamical relaxation of the vacuum energy.That is, particles are abundantly produced at the expense of the quantum vacuum energy while the zero mode comes back to almost its initial value.In both cases we obtain analytically and numerically the equation of state which turns to be written in terms of an effective polytropic index that interpolates between vacuum and radiation-like domination. We find that simplified analysis based on harmonic behavior of the zero mode, giving rise to a Mathieu equation forthe non-zero modes miss important physics. Furthermore, analysis that do not include the full backreaction do not conserve energy, resulting in unbound particle production. Our results do not support the recent claim of symmetry restoration by non-equilibrium fluctuations.Finally estimates of the reheating temperature are given,as well as a discussion of the inconsistency of a kinetic approach to thermalization when a non-perturbatively large number of particles is created.Comment: Latex file, 52 pages and 24 figures in .ps files. Minor changes. To appear in Physical Review D, 15 December 199

Perturbative nonequilibrium dynamics of phase transitions in an expanding universe

A complete set of Feynman rules is derived, which permits a perturbative description of the nonequilibrium dynamics of a symmetry-breaking phase transition in $\lambda\phi^4$ theory in an expanding universe. In contrast to a naive expansion in powers of the coupling constant, this approximation scheme provides for (a) a description of the nonequilibrium state in terms of its own finite-width quasiparticle excitations, thus correctly incorporating dissipative effects in low-order calculations, and (b) the emergence from a symmetric initial state of a final state exhibiting the properties of spontaneous symmetry breaking, while maintaining the constraint $\equiv 0$. Earlier work on dissipative perturbation theory and spontaneous symmetry breaking in Minkowski spacetime is reviewed. The central problem addressed is the construction of a perturbative approximation scheme which treats the initial symmetric state in terms of the field $\phi$, while the state that emerges at later times is treated in terms of a field $\zeta$, linearly related to $\phi^2$. The connection between early and late times involves an infinite sequence of composite propagators. Explicit one-loop calculations are given of the gap equations that determine quasiparticle masses and of the equation of motion for $$ and the renormalization of these equations is described. The perturbation series needed to describe the symmetric and broken-symmetry states are not equivalent, and this leads to ambiguities intrinsic to any perturbative approach. These ambiguities are discussed in detail and a systematic procedure for matching the two approximations is described.Comment: 22 pages, using RevTeX. 6 figures. Submitted to Physical Review

Critical fluctuations and breakdown of Stokes-Einstein relation in the Mode-Coupling Theory of glasses

We argue that the critical dynamical fluctuations predicted by the mode-coupling theory (MCT) of glasses provide a natural mechanism to explain the breakdown of the Stokes-Einstein relation. This breakdown, observed numerically and experimentally in a region where MCT should hold, is one of the major difficulty of the theory, for which we propose a natural resolution based on the recent interpretation of the MCT transition as a bona fide critical point with a diverging length scale. We also show that the upper critical dimension of MCT is d_c=8.Comment: Proceedings of the workshop on non-equilibrium phenomena in supercooled fluids, glasses and amorphous materials (17-22 September, 2006, Pisa

Defect Formation and Critical Dynamics in the Early Universe

We study the nonequilibrium dynamics leading to the formation of topological defects in a symmetry-breaking phase transition of a quantum scalar field with \lambda\Phi^4 self-interaction in a spatially flat, radiation-dominated Friedmann-Robertson-Walker Universe. The quantum field is initially in a finite-temperature symmetry-restored state and the phase transition develops as the Universe expands and cools. We present a first-principles, microscopic approach in which the nonperturbative, nonequilibrium dynamics of the quantum field is derived from the two-loop, two-particle-irreducible closed-time-path effective action. We numerically solve the dynamical equations for the two-point function and we identify signatures of topological defects in the infrared portion of the momentum-space power spectrum. We find that the density of topological defects formed after the phase transition scales as a power law with the expansion rate of the Universe. We calculate the equilibrium critical exponents of the correlation length and relaxation time for this model and show that the power law exponent of the defect density, for both overdamped and underdamped evolution, is in good agreement with the "freeze-out" scenario of Zurek. We introduce an analytic dynamical model, valid near the critical point, that exhibits the same power law scaling of the defect density with the quench rate. By incorporating the realistic quench of the expanding Universe, our approach illuminates the dynamical mechanisms important for topological defect formation. The observed power law scaling of the defect density with the quench rate, observered here in a quantum field theory context, provides evidence for the "freeze-out" scenario in three spatial dimensions.Comment: 31 pages, RevTex, 8 figures in EPS forma

Equating accelerometer estimates among youth : the Rosetta Stone 2

Different accelerometer cutpoints used by different researchers often yields vastly different estimates of moderate-to-vigorous intensity physical activity (MVPA). This is recognized as cutpoint non-equivalence (CNE), which reduces the ability to accurately compare youth MVPA across studies. The objective of this research is to develop a cutpoint conversion system that standardizes minutes of MVPA for six different sets of published cutpoint

Phase Structure and Compactness

In order to study the influence of compactness on low-energy properties, we compare the phase structures of the compact and non-compact two-dimensional multi-frequency sine-Gordon models. It is shown that the high-energy scaling of the compact and non-compact models coincides, but their low-energy behaviors differ. The critical frequency $\beta^2 = 8\pi$ at which the sine-Gordon model undergoes a topological phase transition is found to be unaffected by the compactness of the field since it is determined by high-energy scaling laws. However, the compact two-frequency sine-Gordon model has first and second order phase transitions determined by the low-energy scaling: we show that these are absent in the non-compact model.Comment: 21 pages, 5 figures, minor changes, final version, accepted for publication in JHE

Absorbing customer knowledge: how customer involvement enables service design success

Customers are a knowledge resource outside of the firm that can be utilized for new service success by involving them in the design process. However, existing research on the impact of customer involvement (CI) is inconclusive. Knowledge about customers’ needs and on how best to serve these needs (articulated in the service concept) is best obtained from customers themselves. However, codesign runs the risk of losing control of the service concept. This research argues that of the processes of external knowledge, acquisition (via CI), customer knowledge assimilation, and concept transformation form a capability that enables the firm to exploit customer knowledge in the form of a successful new service. Data from a survey of 126 new service projects show that the impact of CI on new service success is fully mediated by customer knowledge assimilation (the deep understanding of customers’ latent needs) and concept transformation (the modification of the service concept due to customer insights). However, its impact is more nuanced. CI exhibits an “∩”-shaped relationship with transformation, indicating there is a limit to the beneficial effect of CI. Its relationship with assimilation is “U” shaped, suggesting a problem with cognitive inertia where initial learnings are ignored. Customer knowledge assimilation directly impacts success, while concept transformation only helps success in the presence of resource slack. An evolving new service design is only beneficial if the firm has the flexibility to adapt to change