Additional file 8: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Maximum likelihood tree of the SUT genes, with heat map and domain architectures. Note that in the SUT1 clade, there is a tendency for genes to express more strongly in later life cycle stages, culminating in a sharp increase in expression in stage 6–2. (PDF 43 kb

Additional file 14: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Orthogroups in each stage of three Orobanchaceae life cycles. The data suggest different orthogroups being expressed in a variety of stages throughout the life cycle, especially in the MST family. (XLSX 21 kb

Additional file 1: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

The ERD6-like clade of MSTs from parasitic plant transcriptomes and non-parasitic Mimulus genome. Please note the Triphysaria ERD6-like clade members with strongest expression in stage 2, in contrast with Phelipanche and Striga. (PDF 30 kb

Additional file 10: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

MEME motifs and their associations with stages of the life cycle. These associations were determined by finding the genes to which these motifs belonged, and determined the stage in which these genes are most strongly expressed. This was done for (A) MSTs, (B) SUTs, and (C) SWEETs. The motifs most strongly associated with given stages were determined by finding the stage with the highest raw number of occurrences of the motif in that stage, as well as the representation of that motif as a percentage of motifs present in genes that showed strongest expression during that stage. (XLSX 47 kb

Additional file 16: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

The clades with which each orthogroup is most strongly associated. These orthogroups were identified in the A) MST, B) SUT and C) SWEET families. Note that many sugar transporter clades have at least one orthogroup that is unique to them. In the SUT family, one orthogroup has all SUT1 and SUT4 sequences studied as members. (XLSX 14 kb

Additional file 6: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Numbers of sugar transporters and their stages of strongest expression in Phelipanche aegyptiaca. The stages of strongest expression are shown for each clade of MSTs, SUTs and SWEETs, as well as for all MSTs, SUTs and SWEETs, in the transcriptomes of P. aegyptiaca, S. hermonthica, T. versicolor. (XLSX 13 kb

Additional file 4: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

The VGT clade of MSTs from parasitic plant transcriptomes and non-parasitic Mimulus genome. Note the tendency to express more strongly in stages 6–1 and 6–2. (PDF 23 kb

Additional file 3: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

The TMT clade of MSTs from parasitic plant transcriptomes and non-parasitic Mimulus genome. Note the slight increase in TMT expression during pre-connection and haustorial connection phases. (PDF 24 kb

Additional file 9: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Maximum likelihood tree of the SWEET genes, with heat map and domain architectures. Note the strong tendency to show higher levels of expression during the reproductive stage 6–2, with some exceptions in clades II and III. (PDF 73 kb

Additional file 17: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Every sugar transporter gene, their strongest stage of expression, clade and orthogroup. The clade, stage of strongest expression and orthogroup are listed for genes in the A) MST, B) SUT and C) SWEET families. (XLSX 10 kb