26 research outputs found
Structure–Property Relationship of Oxygen-Doped Two-Dimensional Gallium Selenide for Hydrogen Evolution Reaction Revealed from Density Functional Theory
Two-dimensional
(2D) gallium selenide (GaSe) is known for its inert
surface and wide bandgap, limiting its application as a photocatalytic
material for the hydrogen evolution reaction (HER). Partial substitution
of Se with O atoms can improve its catalytic efficiency. This work
discovered that the surface activity of the substitutional O-doped
single-layer GaSe surfaces (GaSe1–xOx, for x ≤ 22%)
and their bandgap sizes are dependent on the detailed atomic configuration
of the dopants, as revealed from density functional theory. For GaSe1–xOx at
low O contents, where all O atoms are favorably separated by at least
one -Ga-Se-Ga- unit, the surface activity for the HER is insignificantly
improved by increasing dopant concentration. By contrast, when more
O dopants are available and arranged in adjacent positions (O-Ga-O),
the hydrogen adsorption efficiency of GaSe1–xOx increases and their bandgaps
are reduced with increasing dopant concentration. These important
features are attributed to weakening of the Ga–O covalent interaction
in these more localized dopant arrangements, which in turn strengthens
the O–H bonds. This weakened Ga–O covalent bond also
descends the conduction band minimum toward the Fermi level, resulting
in bandgap reduction and thus favoring visible-light absorption. Optimal
atomic configurations (all having localized O-dopant arrangements)
have been identified, and they exhibit almost thermoneutral hydrogen
adsorption free energy ΔGH and small
bandgaps (2.09–2.21 eV), making them promising materials to
perform an efficient HER. Fine-tuning the Ga–O interaction
by applying tensile strength TS parallel
to the 2D surface of up to 1% further reduces their bandgaps to 1.95–2.05
eV. Our theoretical predictions suggest that controlling the atomic
configuration of dopants provides opportunities for engineering single-layered
GaSe1–xOx materials with surface reactivity and bandgaps that suit photocatalytic
water splitting
Reductions of Oxygen, Carbon Dioxide, and Acetonitrile by the Magnesium(II)/Magnesium(I) Couple in Aqueous Media: Theoretical Insights from a Nano-Sized Water Droplet
Reductions of O<sub>2</sub>, CO<sub>2</sub>, and CH<sub>3</sub>CN by the half-reaction of the Mg(II)/Mg(I)
couple (Mg<sup>2+</sup> + e<sup>–</sup> → Mg<sup>+•</sup>) confined in a nanosized water droplet ([Mg(H<sub>2</sub>O)<sub>16</sub>]<sup>•+</sup>) have been examined theoretically by
means of density functional theory based molecular dynamics methods.
The present works have revealed many intriguing aspects of the reaction
dynamics of the water clusters within several picoseconds or even
in subpicoseconds. The reduction of O<sub>2</sub> requires an overall
doublet spin state of the system. The reductions of CO<sub>2</sub> and CH<sub>3</sub>CN are facilitated by their bending vibrations
and the electron-transfer processes complete within 0.5 ps. For all
reactions studied, the radical anions, i.e., O<sub>2</sub><sup>•–</sup>, CO<sub>2</sub><sup>•–</sup>, and CH<sub>3</sub>CN<sup>•–</sup>, are initially formed on the cluster surface.
O<sub>2</sub><sup>•–</sup> and CO<sub>2</sub><sup>•–</sup> can integrate into the clusters due to their high hydrophilicity.
They are either solvated in the second solvation shell of Mg<sup>2+</sup> as a solvent-separated ion pair (ssip) or directly coordinated to
Mg<sup>2+</sup> as a contact-ion pair (cip) having the <sup>1</sup>η-[MgO<sub>2</sub>]<sup>•+</sup> and <sup>1</sup>η-[MgOCO]<sup>•+</sup> coordination modes. The <sup>1</sup>η-[MgO<sub>2</sub>]<sup>•+</sup> core is more crowded than the <sup>1</sup>η-[MgOCO]<sup>•+</sup> core. The reaction enthalpies
of the formation of ssip and cip of [Mg(CO<sub>2</sub>)(H<sub>2</sub>O)<sub>16</sub>]<sup>•+</sup> are −36 ± 4 kJ mol<sup>–1</sup> and −30 ± 9 kJ mol<sup>–1</sup>, respectively, which were estimated based on the average temperature
changes during the ion–molecule reaction between CO<sub>2</sub> and [Mg(H<sub>2</sub>O)<sub>16</sub>]<sup>•+</sup>. The values
for the formation of ssip and cip of [Mg(O<sub>2</sub>)(H<sub>2</sub>O)<sub>16</sub>]<sup>•+</sup> are estimated to be −112
± 18 kJ mol<sup>–1</sup> and −128 ± 28 kJ
mol<sup>–1</sup>, respectively. CH<sub>3</sub>CN<sup>•–</sup> undergoes protonation spontaneously to form the hydrophobic [CH<sub>3</sub>CN, H]<sup>•</sup>. Both CH<sub>3</sub>CN and [CH<sub>3</sub>CN, H]<sup>•</sup> cannot efficiently penetrate into
the clusters with activation barriers of 22 kJ mol<sup>–1</sup> and ∼40 kJ mol<sup>–1</sup>, respectively. These results
provide fundamental insights into the solvation dynamics of the Mg<sup>2+</sup>/Mg<sup>•+</sup> couple on the molecular level
Ab Initio Studies on Al<sup>+</sup>(H<sub>2</sub>O)<i><sub>n</sub></i>, HAlOH<sup>+</sup>(H<sub>2</sub>O)<i><sub>n</sub></i><sub>-</sub><sub>1</sub>, and the Size-Dependent H<sub>2</sub> Elimination Reaction
We report computational studies on Al+(H2O)n, n = 6−9, and HAlOH+(H2O)n-1, n = 6−14, by
the density functional theory based ab initio molecular dynamics method, employing a planewave basis
set with pseudopotentials, and also by conventional methods with Gaussian basis sets. The mechanism
for the intracluster H2 elimination reaction is explored. First, a new size-dependent insertion reaction for
the transformation of Al+(H2O)n into HAlOH+(H2O)n-1 is discovered for n ≥ 8. This is because of the presence
of a fairly stable six-water-ring structure in Al+(H2O)n with 12 members, including the Al+. This structure
promotes acidic dissociation and, for n ≥ 8, leads to the insertion reaction. Gaussian based BPW91 and
MP2 calculations with 6-31G* and 6-31G** basis sets confirmed the existence of such structures and located
the transition structures for the insertion reaction. The calculated transition barrier is 10.0 kcal/mol for n =
9 and 7.1 kcal/mol for n = 8 at the MP2/6-31G** level, with zero-point energy corrections. Second, the
experimentally observed size-dependent H2 elimination reaction is related to the conformation of
HAlOH+(H2O)n-1, instead of Al+(H2O)n. As n increases from 6 to 14, the structure of the HAlOH+(H2O)n-1
cluster changes into a caged structure, with the Al−H bond buried inside, and protons produced in acidic
dissociation could then travel through the H2O network to the vicinity of the Al−H bond and react with the
hydride H to produce H2. The structural transformation is completed at n = 13, coincident approximately
with the onset of the H2 elimination reaction. From constrained ab initio MD simulations, we estimated the
free energy barrier for the H2 elimination reaction to be 0.7 eV (16 kcal/mol) at n = 13, 1.5 eV (35 kcal/mol)
at n = 12, and 4.5 eV (100 kcal/mol) at n = 8. The existence of transition structures for the H2 elimination
has also been verified by ab initio calculations at the MP2/6-31G** level. Finally, the switch-off of the H2
elimination for n > 24 is explored and attributed to the diffusion of protons through enlarged hydrogen
bonded H2O networks, which reduces the probability of finding a proton near the Al−H bond
How Large Is the [Fe<sup>III</sup>(Protoporphyrin IX)]<sup>+</sup> Ion (Hemin<sup>+</sup>) in the Gas Phase?
Comparison of the collision cross-section of the [FeIII−protoporphyrin IX]+ ion, hemin+, measured by means
of ion-mobility experiments and the cross-sections calculated from theoretical structures based on density
functional theory reveals that hemin+, in the gas phase, contains intramolecular hydrogen bonding between
its two propionic acid side-chains
Masked Reactivity of Hydrated Clusters of Monovalent Manganese Ions: Water Insertion versus Nitrous Oxide Activation–A Density Functional Theory Investigation
Previous mass spectrometric (MS) studies demonstrated
that singly
charged hydration clusters of manganese ions [Mn(H2O)n]+ were, on one hand, highly reactive
toward intracluster water insertion but, on the other hand, inert
toward nitrous oxide activation. This contrast in reactivity has been
rationalized by our present theoretical investigation for the interconversion
between the pristine Mn(I) monovalent form as a monatomic ion in [MnI(H2O)n]+ and the oxidized Mn(III) trivalent form as a hydride–hydroxide
in [HMnIIIOH(H2O)n−1], as well as their reactivity toward nitrous oxide activation. Our
theoretical interpretations are supported with quantum chemical calculations
based on density functional theory (DFT), performed systematically
for the cluster-size range of n = 1 – 12.
Our DFT results show that water insertion is kinetically and thermodynamically
favorable for n ≥ 8, suggesting [HMnIIIOH(H2O)n−1]+ is the predominant form, as observed in previous MS experiments.
While [MnI(H2O)n]+ is capable of N2O reduction, the process
of which is highly exothermic, similar reactions are unfavorable with
[HMnIIIOH(H2O)n−1]+, which can only form weakly bound adducts with N2O. This work demonstrates the masking effect of water molecules
over the high reactivity of the hydrated Mn(I) center and sheds light
on the potential roles of water in transition metal systems
Hydration Leads to Efficient Reactions of the Carbonate Radical Anion with Hydrogen Chloride in the Gas Phase
The
carbonate radical anion CO<sub>3</sub><sup>•–</sup> is
a key intermediate in tropospheric anion chemistry. Despite its
radical character, only a small number of reactions have been reported
in the literature. Here we investigate the gas-phase reactions of
CO<sub>3</sub><sup>•–</sup> and CO<sub>3</sub><sup>•–</sup>(H<sub>2</sub>O) with HCl under ultrahigh vacuum conditions. Bare
CO<sub>3</sub><sup>•–</sup> forms OHCl<sup>•–</sup> with a rate constant of 4.2 × 10<sup>–12</sup> cm<sup>3</sup> s<sup>–1</sup>, which corresponds to an efficiency
of only 0.4%. Hydration accelerates the reaction, and ligand exchange
of H<sub>2</sub>O against HCl proceeds with a rate of 2.7 × 10<sup>–10</sup> cm<sup>3</sup> s<sup>–1</sup>. Quantum chemical
calculations reveal that OHCl<sup>•–</sup> is best described
as an OH<sup>•</sup> hydrogen bonded to Cl<sup>–</sup>, while the ligand exchange product is Cl<sup>–</sup>(HCO<sub>3</sub><sup>•</sup>). Under tropospheric conditions, where
CO<sub>3</sub><sup>•–</sup>(H<sub>2</sub>O) is the dominant
species, Cl<sup>–</sup>(HCO<sub>3</sub><sup>•</sup>)
is efficiently formed. These reactions must be included in models
of tropospheric anion chemistry
Abundant Dipositively Charged Protonated a<sub>2</sub> and a<sub>3</sub> Ions from Diproline and Triproline
Abundant (a2 + H)2+ from diproline and (a3 + H)2+ from triproline were observed via collisionally activated charge disproportionation of [La(peptide)(CH3CN)1,2]3+. These small, dipositive ions with the charges formally located on the peptide backbone are stabilized by charge delocalization onto the pyrrolidine-derived rings, making their formation competitive against other monopositive ions. The (a2 + H)2+ and (a3 + H)2+ ions from diproline and triproline are major products in contrast with those derived from triglycine, whose unprecedented and surprising observations were recently reported (Shi et al. Angew. Chem., Int. Ed. 2008, 47, 8288−8291)
Optimization of Parameters Used in Algorithms of Ion-Mobility Calculation for Conformational Analyses
Structural information of gaseous ions can be obtained by comparing their collision cross sections as determined by ion-mobility experiments with those by theoretical modeling. Three theoretical models, the projection approximation (PA), the exact hard-sphere scattering (EHSS), and the trajectory (TJ) models, have been employed to determine the theoretical cross sections of candidate geometries. The accuracy of these models is largely dependent on the empirical parameters used for ion−buffer gas interactions. Optimal empirical parameters for each model have been determined by comparing the experimental cross sections of 20 calibrant ions with their theoretical cross sections obtained by using geometries sampled by density-functional-theory-based molecular dynamics simulations. The maximum absolute deviations of the cross sections of 15.5% (PA), 20.7% (EHSS), and 11.7% (TJ) obtained from the original parameters are reduced to 5.6% (PA), 4.6% (EHSS), and 3.4% (TJ) obtained from the new optimized parameters. The root-mean-square deviations of the predicted cross sections using the new parameters from the experimental values are also drastically reduced to 2.1% (PA), 1.9% (EHSS), and 1.6% (TJ). The new parameters are verified on protonated triglycine, protonated trialanine, and doubly protonated bradykinin
Bond Dissociation Energies of Solvated Silver(I)−Amide Complexes: Competitive Threshold Collision-Induced Dissociations and Calculations
Using competitive threshold collision-induced dissociation (TCID) measurements, experimental bond dissociation energies have been evaluated for the water, methanol, and acetonitrile adducts of silver(I)−amide complexes. The influence of the solvent molecules on the binding energy of silver(I) to acetamide, N-methylacetamide, and N,N-dimethylacetamide was investigated. Experimental results show that solvents decrease the amide binding energy by 4−6 kcal mol−1. Using density functional theory (DFT), binding energies were evaluated using nine functionals, after full geometry optimizations with the ECP28MWB basis set for silver and the 6-311++G(2df,2pd) basis set for the other atomic constituents of the ligands. In addition, calculations employing the DZVP basis set for Ag and DZVP2 for C, H, N, and O atoms at the B3LYP and MP2 levels of theory were used to investigate the influence of the basis set on the theoretical bond energies. A comparison of the experimental and theoretical silver(I)−ligand bond dissociation energies enables an assessment of the limitations in the basis sets and functionals in describing the energetics of the metal−solvent interaction and the metal−amide interaction. No single functional/basis set combination was found capable of predicting binding energies with a sufficiently high level of accuracy for the silver(I)−amide solvent complexes
Threshold Collision-Induced Dissociation Measurements Using a Ring Ion Guide as the Collision Cell in a Triple-Quadrupole Mass Spectrometer
A triple-quadrupole mass spectrometer has been modified for bond-dissociation energy measurements via threshold collision-induced dissociations (TCIDs) by replacing the conventional collision cell with a ring ion guide. Optimal operating conditions for the ring ion guide were determined or derived, and validated using a set of complexes for which bond dissociation energies are known. A comparison with reference data (within a range of 16−57 kcal/mol) indicates an accuracy approaching that of TCID determined on a guided ion-beam mass spectrometer. Complexes for which bond-dissociation energies were measured include metal ion complexes of simple ligands, amino acids and peptides, as well as of carbonic acid. There is excellent agreement between our experimental data and literature data, as well as theoretical data determined using a high-level computational method
