16 research outputs found
Calo_mtDNA_haplos.trees
BEAST v1.8.0 and TreeAnnotator v1.80.0 output files for the concatenated mtDNA
Dryad Greenbulls - Vangestel Carl
Microsatellite data (10 loci) of 362 birds (Phyllastrephus cabanisi) sampled in the Taita Hills, Kenya during 2 periods (first period (1996-2000), second period (2006-2010))
Calo_IMa2
Input file of IMa2 analysi
Map of the study area with the location of three large (MB, CH, NG) and two small (FU, ND) indigenous forest fragments that hold breeding populations of cabanis’s greenbul (<i>Phyllastrephus</i><i>cabanisi</i>).
<p>Analyses were performed along linear transects at two different geographical scales: a local (within-fragment) scale in fragment MB (A), and a landscape (among-fragment) scale including fragments CH, NG, FU and ND (B).</p
Multiple distance class plots illustrating the gradual decay of positive genetic structure with increasing geographical distance.
<p>Plots are shown for each sex at various spatio-temporal scales: at a regional scale for period 1 (a), period 2 (b) and both sexes lumped (c); at a local scale (within Mbololo) for period 2 (d). Error bars indicate 95% CI as determined by 9999 bootstraps.</p
Calo_CAD_haplos.info
List of individuals in which each cad haplotype was found
Distribution of randomized statistics under the null hypothesis of equal dispersal rates in both sexes.
<p>Permuted test statistics are ‘male mAI<sub>c</sub>-female mAIc’ (left) and ‘vAI<sub>c</sub> female/vAI<sub>c</sub> male’ (right). Observed statistics are indicated by vertical dashed line and extreme positive values indicate female-biased dispersal. Upper panel: regional - period 1; middle panel: regional - period 2; lower panel: local - period 2.</p
Calo_CAD_haplos.trees
BEAST v1.8.0 and TreeAnnotator v1.80.0 output files for the nuclear genes cad
Levels of admixture provided by Bayesian clustering analyses (STRUCTURE) for each period separately (left panel: period 1/right panel: period 2).
<p>Following the procedure outlined in [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0071624#B56" target="_blank">56</a>], optimal cluster sizes of K=2 and K=4 were assigned to period 1 and period 2, respectively.</p
Distribution of maximum post-fledging recapture distances of <i>P</i><i>. cabanisi</i> fledglings during their first year and over multiple years.
<p>Data were collected between 2007–2012, sample sizes are indicated above each vertical bar.</p