Sequence-Selective and Hydrolytic Cleavage of DNA by Zinc Finger Mutants

We have reported the successful conversion of the structural zinc site in zinc finger peptides to a functional zinc site. A series of resulting zinc finger mutants exhibit the hydrolytic ability of the activated ester depending on the coordination geometry and acidity of the zinc ions. In this study, we explored the hydrolytic ability of DNA by the H4 mutant since the mutant showed the highest hydrolytic ability of the activated ester among the series of mutant peptides. The zinc-bound form of the H4 mutant peptide exhibited the hydrolytic ability of activated phosphoesters and even converted the supercoiled plasmid to the nicked circular form. An increasing ionic strength leads to a loss in the nuclease ability of the zinc finger mutants due to the nonspecific interaction between the zinc finger peptide and DNA. In sharp contrast, the three-tandem H4-type zinc finger protein performed the specific DNA hydrolysis at the GC box even at a high ionic strength. Thus, the present study demonstrated that converting the native zinc site to the hydrolytic zinc site in the zinc finger protein is a novel approach for creating artificial nucleases with sequence selectivity

Phosphopeptides Designed for 5-Methylcytosine Recognition

An artificial phosphopeptide has been developed through rational design of the interaction with 5-methylcytosine in duplex DNA. The peptide consists of two tandem zinc finger motifs, in one of which the glutamate was replaced with a phosphotyrosine, the phosphotyrosine in the peptide being effective for methylcytosine selectivity of DNA binding. The flexible modulation of the target methylated sequence by rearrangement of zinc finger peptides is possible, and the phosphopeptide provided us an important hint for expansion of the codes for the interactions of zinc fingers with DNA to methylated DNA sequences. The fluorescence-labeled phosphopeptide provided information on the methylation status of genomic DNA through fluorescence anisotropy after a 10 min incubation

Hydrolytic Reaction by Zinc Finger Mutant Peptides: Successful Redesign of Structural Zinc Sites into Catalytic Zinc Sites

To redesign a metal site originally required for the stabilization of a folded protein structure into a functional metal site, we constructed a series of zinc finger mutant peptides such as zf(CCHG) and zf(GCHH), in which one zinc-coordinating residue is substituted into a noncoordinating one. The mutant peptides having water bound to the zinc ion catalyzed the hydrolysis of 4-nitrophenyl acetate as well as the enantioselective hydrolysis of amino acid esters. All the zinc complexes of the mutant peptides showed hydrolytic activity, depending on their peptide sequences. In contrast, the zinc complex of the wild-type, zf(CCHH), and zinc ion alone exhibited no hydrolytic ability. These results clearly indicate that the catalytic abilities are predominantly attributed to the zinc center in the zinc complexes of the mutant peptides. Kinetic studies of the mutant peptides demonstrated that the catalytic hydrolysis is affected by the electron-donating ability of the protein ligands and the coordination environment. In addition, the pH dependence of the hydrolysis strongly suggests that the zinc-coordinated hydroxide ion participates the catalytic reaction. This report is the first successful study of catalytically active zinc finger peptides

Osmium Complexation of Mismatched DNA: Effect of the Bases Adjacent to Mismatched 5-Methylcytosine

The efficiency of osmium complex formation at 5-methylcytosine in mismatched DNA duplexes is a key point for the design of sequence-specific detection of DNA methylation. Osmium complexation was not observed in fully matched duplexes, whereas the complexation site and efficiency in mismatched duplexes changed depending on the type of 5′-neighboring base of the 5-methylcytosine forming a mismatched base pair. In particular, when the base adjacent to the 5′ side of the mismatched base pair was thymine, a unique “side reaction” was observed. However, the nature of the mismatched base pairs in the reaction site did not influence the selectivity of osmium complex formation with methylated DNA

Synthesis and Two-Electron Redox Behavior of Diazuleno[2,1-<i>a</i>:1,2-<i>c</i>]naphthalenes

The Diels−Alder reaction of di-2-azulenylacetylene with tetraphenylcyclopentadienone afforded 7,8,9,10-tetraphenyldiazuleno[2,1-a:1,2-c]naphthalene in one pot via autoxidation of the presumed 1,2-di-2-azulenylbenzene derivative. In contrast, a similar reaction of bis(1-methoxycarbonyl-2-azulenyl)acetylene with tetraphenylcyclopentadienone gave the 1,2-di-2-azulenylbenzene derivative. The following cyclodehydrogenation reaction of the benzene derivative with iron(III) chloride afforded diazuleno[2,1-a:1,2-c]naphthalene 6,11-bismethoxycarbonyl derivative. The redox behavior of these novel diazuleno[2,1-a:1,2-c]naphthalenes was examined by cyclic voltammetry (CV). These compounds exhibited two-step oxidation waves at +0.22 to +0.71 V upon CV, which revealed the formation of a radical cation and dication stabilized by the fused two azulene rings under the electrochemical oxidation conditions. Since the 1,2-di-2-azulenylbenzene derivative was oxidized at higher oxidation potentials (+0.83 and +1.86 V), the fusion of the two azulene rings to naphthalene increased electron-donating properties because of the formation of a closed-shell dicationic structure. Formation of the radical cation was characterized by UV−vis spectroscopy under the electrochemical oxidation conditions, although no evidence was obtained for the presumed dication under the conditions of the UV−vis spectroscopy measurement

Synthesis and Properties of Hexakis(6-octyl-2-azulenyl)benzene as a Multielectron Redox System with Liquid Crystalline Behavior

This paper describes the cyclotrimerization reaction of di(2-azulenyl)acetylenes (2a,b) catalyzed by Co2(CO)8 to produce hexa(2-azulenyl)benzene derivatives (1a,b). The cyclooligomerization of 2a and 2b utilizing CpCo(CO)2 as a catalyst produced (η5-cyclopentadienyl)[tetra(2-azulenyl)cyclobutadiene]cobalt complexes (3a,b). The redox behavior of hexakis(6-octyl-2-azulenyl)benzene (1b), bis(6-octyl-2-azulenyl)acetylene (2b), and the cobalt complexes 3a and 3b along with 6-octyl-2-phenylazulene (19) was examined by cyclic voltammetry (CV). The reduction of compound 1b exhibited multiple-electron transfers in one step upon CV with a reduction potential similar to that of compound 19. However, the CVs of compounds 2b, 3a, and 3b were characterized by stepwise waves because of the reduction of each azulene ring. The mesomorphic behaviors of 1b, 2b, and 19 were also studied by differential scanning calorimetry (DSC), polarizing optical microscopy (POM), and X-ray diffraction (XRD) techniques. A new series of azulene derivatives, 1b, 2b, and 19, substituted by a long alkyl chain at the 6-position shows mesomorphism with crystalline polymorphs. Compound 1b showed a large temperature range of hexagonal columnar mesophases (Colho) from 115.5 to 199.9 °C. Compound 2b has rectangular columnar (Colro), smectic E (SE), and nematic (N) mesophases. Compound 19 exhibited an SE mesophase

Synthesis and Properties of Hexakis(6-octyl-2-azulenyl)benzene as a Multielectron Redox System with Liquid Crystalline Behavior

This paper describes the cyclotrimerization reaction of di(2-azulenyl)acetylenes (2a,b) catalyzed by Co2(CO)8 to produce hexa(2-azulenyl)benzene derivatives (1a,b). The cyclooligomerization of 2a and 2b utilizing CpCo(CO)2 as a catalyst produced (η5-cyclopentadienyl)[tetra(2-azulenyl)cyclobutadiene]cobalt complexes (3a,b). The redox behavior of hexakis(6-octyl-2-azulenyl)benzene (1b), bis(6-octyl-2-azulenyl)acetylene (2b), and the cobalt complexes 3a and 3b along with 6-octyl-2-phenylazulene (19) was examined by cyclic voltammetry (CV). The reduction of compound 1b exhibited multiple-electron transfers in one step upon CV with a reduction potential similar to that of compound 19. However, the CVs of compounds 2b, 3a, and 3b were characterized by stepwise waves because of the reduction of each azulene ring. The mesomorphic behaviors of 1b, 2b, and 19 were also studied by differential scanning calorimetry (DSC), polarizing optical microscopy (POM), and X-ray diffraction (XRD) techniques. A new series of azulene derivatives, 1b, 2b, and 19, substituted by a long alkyl chain at the 6-position shows mesomorphism with crystalline polymorphs. Compound 1b showed a large temperature range of hexagonal columnar mesophases (Colho) from 115.5 to 199.9 °C. Compound 2b has rectangular columnar (Colro), smectic E (SE), and nematic (N) mesophases. Compound 19 exhibited an SE mesophase

Raw Data- IC kit.csv

In this study, we evaluate the newly developed IC test kit for Norovirus and Rotavirus detection (IP-Noro/Rota; ImmunoProbe Co., Ltd., Saitama, Japan) in 100 stool samples collected from pediatric patients with acute gastroenteritis (severe dehydration, abdominal pain and vomiting) in Bangladesh during January to June 2015 after getting a written consent from the patients’ guardian