9 research outputs found
The Effects of Chloride Binding on the Behavior of Cellulose-Derived Solutes in the Ionic Liquid 1‑Butyl-3-methylimidazolium Chloride
The structure and diffusion of various linear and ringed
solutes
are examined in two different solvents, the ionic liquid 1-butyl-3-methylimidazolium
chloride ([BMIM]ÂCl) and SPC/E water, using molecular dynamics (MD)
simulations. The formation of distinctly ordered local solvent environments
around these solutes is observed. Specifically, spatial distribution
functions reveal significant ordering of the solvents around the solutes
with chloride–hydroxyl group interactions largely dictating
these arrangements. Further, a breakdown of the hydrogen bonds that
develop between the solute and solvent is provided, showing a relationship
between the presence of additional functional groups and the distribution
of hydrogen bonds. The diffusivities of the solutes were determined
in water at 298 K, 1 bar and [BMIM]Cl at 400 K, 1 bar. The results
show that the solutes were approximately 10–100 times more
diffusive in water than in [BMIM]ÂCl. Within [BMIM]ÂCl, diffusivity
appears to decrease with increasing strength of the hydroxyl groups
present. Additionally, the free energies of solvation of the solutes
are determined with COSMO-RS, providing information about their tendencies
in forming aggregates. These results are then compared with MD results
in which aggregation is quantified through the use of a dispersion
measure. Though all solutes remained relatively dispersed in each
of the solvents, those with hydroxyl groups were seen to be the most
highly dispersed in the solvent [BMIM]ÂCl. Further, the dynamic dispersal
of a large solute aggregate into [BMIM]Cl was studied, finding that
solutes with hydroxyl groups tend to form complexes with the chloride
ions. If strong enough, these chlorides can actually bind multiple
solutes together into long chains, inhibiting their dispersal in solvent.
It is believed that the formation of these chloride–solute
complexes is largely responsible for the decreased diffusivity and
elevated dispersion seen in simulations with [BMIM]ÂCl
Atomistic Potentials for Trisiloxane, Alkyl Ethoxylate, and Perfluoroalkane-Based Surfactants with TIP4P/2005 and Application to Simulations at the Air–Water Interface
The mechanism of superspreading,
the greatly enhanced spreading
of water droplets facilitated by trisiloxane surfactants, is still
under debate, largely because the role and behavior of the surfactants
cannot be sufficiently resolved by experiments or continuum simulations.
Previous molecular dynamics studies have been performed with simple
model molecules or inaccurate models, strongly limiting their explanatory
power. Here we present a force field dedicated to superspreading,
extending existing quantum-chemistry-based models for the surfactant
and the TIP4P/2005 water model (Abascal et al. J. Chem. Phys., 2005, 123, 234505). We apply the model to superspreading trisiloxane surfactants and
nonsuperspreading alkyl ethoxylate and perfluoroalkane surfactants
at various concentrations at the air–water interface. We show
that the developed model accurately predicts surface tensions, which
are typically assumed important for superspreading. Significant differences
between superspreading and traditional surfactants are presented and
their possible relation to superspreading discussed. Although the
force field has been developed for superspreading problems, it should
also perform well for other simulations involving polymers or copolymers
with water
Observed Mechanism for the Breakup of Small Bundles of Cellulose Iα and Iβ in Ionic Liquids from Molecular Dynamics Simulations
Explicit, all-atom molecular dynamics
simulations are used to study
the breakup of small bundles of cellulose Iα and Iβ in
the ionic liquids [BMIM]ÂCl, [EMIM]ÂAc, and [DMIM]ÂDMP. In all cases,
significant breakup of the bundles is observed with the initial breakup
following a common underlying mechanism. Anions bind strongly to the
hydroxyl groups of the exterior strands of the bundle, forming negatively
charged complexes. Binding also weakens the intrastrand hydrogen bonds
present in the cellulose strands, providing greater strand flexibility.
Cations then intercalate between the individual strands, likely due
to charge imbalances, providing the bulk to push the individual moieties
apart and initiating the separation. The peeling of an individual
strand from the main bundle is observed in [EMIM]Ac with an analysis
of its hydrogen bonds with other strands showing that the chain detaches
glucan by glucan from the main bundle in discrete, rapid events. Further
analysis shows that the intrastrand hydrogen bonds of each glucan
tend to break for a sustained period of time before the interstrand
hydrogen bonds break and strand detachment occurs. Examination of
similar nonpeeling strands shows that, without this intrastrand hydrogen
bond breakage, the structural rigidity of the individual unit can
hinder its peeling despite interstrand hydrogen bond breakage
Definition and Computation of Intermolecular Contact in Liquids Using Additively Weighted Voronoi Tessellation
We present a definition of intermolecular surface contact
by applying
weighted Voronoi tessellations to configurations of various organic
liquids and water obtained from molecular dynamics simulations. This
definition of surface contact is used to link the COSMO-RS model and
molecular dynamics simulations. We demonstrate that additively weighted
tessellation is the superior tessellation type to define intermolecular
surface contact. Furthermore, we fit a set of weights for the elements
C, H, O, N, F, and S for this tessellation type to obtain optimal
agreement between the models. We use these radii to successfully predict
contact statistics for compounds that were excluded from the fit and
mixtures. The observed agreement between contact statistics from COSMO-RS
and molecular dynamics simulations confirms the capability of the
presented method to describe intermolecular contact. Furthermore,
we observe that increasing polarity of the surfaces of the examined
molecules leads to weaker agreement in the contact statistics. This
is especially pronounced for pure water
Effects of Water Concentration on the Structural and Diffusion Properties of Imidazolium-Based Ionic Liquid–Water Mixtures
We have used molecular dynamics simulations to study
the properties
of three ionic liquid (IL)–water systems: 1-butyl-3-methylimidazolium
chloride ([bmim]ÂCl), 1-ethyl-3-methylimidazolium acetate ([emim]Â[Ac]),
and 1,3-dimethylimidazolium dimethylphosphate ([dmim]Â[DMP]). We observe
the transition of those mixtures from pure IL to aqueous solution
by analyzing the changes in important bulk properties (density) and
structural and bonding properties (radial distribution functions,
water clustering, hydrogen bonding, and cationic stacking) as well
as dynamical properties (diffusion coefficients) at 12 different concentration
samplings of each mixture, ranging from 0.0 to 99.95 mol % water.
Our simulations revealed across all of the different structural, bonding,
and dynamical properties major structural changes consistent with
a transition from IL–water mixture to aqueous solution in all
three ILs at water concentrations around 75 mol %. Among the structural
changes observed were rapid increase in the frequency of hydrogen
bonds, both water–water and water–anion. Similarly,
at these critical concentrations, the water clusters formed begin
to span the entire simulation box, rather than existing as isolated
networks of molecules. At the same time, there is a sudden decrease
in cationic stacking at the transition point, followed by a rapid
increase near 90 mol % water. Finally, the diffusion coefficients
of individual cations and anions show a rapid transition from rates
consistent with diffusion in IL’s to rates consistent with
diffusion in water beginning at 75 mol % water. The location of this
transition is consistent, for [bmim]Cl and [dmim]Â[DMP], with the water
concentration limit above which the ILs are unable to dissolve cellulose
Reconsidering Dispersion Potentials: Reduced Cutoffs in Mesh-Based Ewald Solvers Can Be Faster Than Truncation
Long-range dispersion interactions
have a critical influence on
physical quantities in simulations of inhomogeneous systems. However,
the perceived computational overhead of long-range solvers has until
recently discouraged their implementation in molecular dynamics packages.
Here, we demonstrate that reducing the cutoff radius for local interactions
in the recently introduced particle–particle particle−mesh
(PPPM) method for dispersion [Isele-Holder et al., <i>J. Chem.
Phys.</i>, <b>2012</b>, <i>137</i>, 174107] can
actually often be faster than truncating dispersion interactions.
In addition, because all long-range dispersion interactions are incorporated,
physical inaccuracies that arise from truncating the potential can
be avoided. Simulations using PPPM or other mesh Ewald solvers for
dispersion can provide results more accurately and more efficiently
than simulations that truncate dispersion interactions. The use of
mesh-based approaches for dispersion is now a viable alternative for
all simulations containing dispersion interactions and not merely
those where inhomogeneities were motivating factors for their use.
We provide a set of parameters for the dispersion PPPM method using
either <i>i</i><b>k</b> or analytic differentiation
that we recommend for future use and demonstrate increased simulation
efficiency by using the long-range dispersion solver in a series of
performance tests on massively parallel computers
Reconsidering Dispersion Potentials: Reduced Cutoffs in Mesh-Based Ewald Solvers Can Be Faster Than Truncation
Long-range dispersion interactions
have a critical influence on
physical quantities in simulations of inhomogeneous systems. However,
the perceived computational overhead of long-range solvers has until
recently discouraged their implementation in molecular dynamics packages.
Here, we demonstrate that reducing the cutoff radius for local interactions
in the recently introduced particle–particle particle−mesh
(PPPM) method for dispersion [Isele-Holder et al., <i>J. Chem.
Phys.</i>, <b>2012</b>, <i>137</i>, 174107] can
actually often be faster than truncating dispersion interactions.
In addition, because all long-range dispersion interactions are incorporated,
physical inaccuracies that arise from truncating the potential can
be avoided. Simulations using PPPM or other mesh Ewald solvers for
dispersion can provide results more accurately and more efficiently
than simulations that truncate dispersion interactions. The use of
mesh-based approaches for dispersion is now a viable alternative for
all simulations containing dispersion interactions and not merely
those where inhomogeneities were motivating factors for their use.
We provide a set of parameters for the dispersion PPPM method using
either <i>i</i><b>k</b> or analytic differentiation
that we recommend for future use and demonstrate increased simulation
efficiency by using the long-range dispersion solver in a series of
performance tests on massively parallel computers
Reconsidering Dispersion Potentials: Reduced Cutoffs in Mesh-Based Ewald Solvers Can Be Faster Than Truncation
Long-range dispersion interactions
have a critical influence on
physical quantities in simulations of inhomogeneous systems. However,
the perceived computational overhead of long-range solvers has until
recently discouraged their implementation in molecular dynamics packages.
Here, we demonstrate that reducing the cutoff radius for local interactions
in the recently introduced particle–particle particle−mesh
(PPPM) method for dispersion [Isele-Holder et al., <i>J. Chem.
Phys.</i>, <b>2012</b>, <i>137</i>, 174107] can
actually often be faster than truncating dispersion interactions.
In addition, because all long-range dispersion interactions are incorporated,
physical inaccuracies that arise from truncating the potential can
be avoided. Simulations using PPPM or other mesh Ewald solvers for
dispersion can provide results more accurately and more efficiently
than simulations that truncate dispersion interactions. The use of
mesh-based approaches for dispersion is now a viable alternative for
all simulations containing dispersion interactions and not merely
those where inhomogeneities were motivating factors for their use.
We provide a set of parameters for the dispersion PPPM method using
either <i>i</i><b>k</b> or analytic differentiation
that we recommend for future use and demonstrate increased simulation
efficiency by using the long-range dispersion solver in a series of
performance tests on massively parallel computers
Translational Entropy and Dispersion Energy Jointly Drive the Adsorption of Urea to Cellulose
The
adsorption of urea on cellulose at room temperature has been
studied using adsorption isotherm experiments and molecular dynamics
(MD) simulations. The immersion of cotton cellulose into bulk urea
solutions with concentrations between 0.01 and 0.30 g/mL led to a
decrease in urea concentration in all solutions, allowing the adsorption
of urea on the cellulose surface to be measured quantitatively. MD
simulations suggest that urea molecules form sorption layers on both
hydrophobic and hydrophilic surfaces. Although electrostatic interactions
accounted for the majority of the calculated interaction energy between
urea and cellulose, dispersion interactions were revealed to be the
key driving force for the accumulation of urea around cellulose. The
preferred orientation of urea and water molecules in the first solvation
shell varied depending on the nature of the cellulose surface, but
urea molecules were systematically oriented parallel to the hydrophobic
plane of cellulose. The translational entropies of urea and water
molecules, calculated from the velocity spectrum of the trajectory,
are lower near the cellulose surface than in bulk. As urea molecules
adsorb on cellulose and expel surface water into the bulk, the increase
in the translational entropy of the water compensated for the decrease
in the entropy of urea, resulting in a total entropy gain of the solvent
system. Therefore, the cellulose–urea dispersion energy and
the translational entropy gain of water are the main factors that
drive the adsorption of urea on cellulose