Rewriting Human History and Empowering Indigenous Communities with Genome Editing Tools.

Appropriate empirical-based evidence and detailed theoretical considerations should be used for evolutionary explanations of phenotypic variation observed in the field of human population genetics (especially Indigenous populations). Investigators within the population genetics community frequently overlook the importance of these criteria when associating observed phenotypic variation with evolutionary explanations. A functional investigation of population-specific variation using cutting-edge genome editing tools has the potential to empower the population genetics community by holding "just-so" evolutionary explanations accountable. Here, we detail currently available precision genome editing tools and methods, with a particular emphasis on base editing, that can be applied to functionally investigate population-specific point mutations. We use the recent identification of thrifty mutations in the CREBRF gene as an example of the current dire need for an alliance between the fields of population genetics and genome editing

The contribution of statistical physics to evolutionary biology

Evolutionary biology shares many concepts with statistical physics: both deal with populations, whether of molecules or organisms, and both seek to simplify evolution in very many dimensions. Often, methodologies have undergone parallel and independent development, as with stochastic methods in population genetics. We discuss aspects of population genetics that have embraced methods from physics: amongst others, non-equilibrium statistical mechanics, travelling waves, and Monte-Carlo methods have been used to study polygenic evolution, rates of adaptation, and range expansions. These applications indicate that evolutionary biology can further benefit from interactions with other areas of statistical physics, for example, by following the distribution of paths taken by a population through time.Comment: 18 pages, 3 figures, glossary. Accepted in Trend in Ecology and Evolution (to appear in print in August 2011

Response by Giuliani et al to Letter Regarding Article, "genetics of Human Longevity Within an Eco-Evolutionary Nature-Nurture Framework"

Comment on Genetics of Human Longevity Within an Eco-Evolutionary Nature-Nurture Framework. [Circ Res. 2018] Letter by Morris Regarding Article, "Genetics of Human Longevity Within an Eco-Evolutionary Nature-Nurture Framework". [Circ Res. 2019

Universality and predictability in molecular quantitative genetics

Molecular traits, such as gene expression levels or protein binding affinities, are increasingly accessible to quantitative measurement by modern high-throughput techniques. Such traits measure molecular functions and, from an evolutionary point of view, are important as targets of natural selection. We review recent developments in evolutionary theory and experiments that are expected to become building blocks of a quantitative genetics of molecular traits. We focus on universal evolutionary characteristics: these are largely independent of a trait's genetic basis, which is often at least partially unknown. We show that universal measurements can be used to infer selection on a quantitative trait, which determines its evolutionary mode of conservation or adaptation. Furthermore, universality is closely linked to predictability of trait evolution across lineages. We argue that universal trait statistics extends over a range of cellular scales and opens new avenues of quantitative evolutionary systems biology

The Morphogenesis Of Evolutionary Developmental Biology

The early studies of evolutionary developmental biology (Evo-Devo) come from several sources. Tributaries flowing into Evo-Devo came from such disciplines as embryology, developmental genetics, evolutionary biology, ecology, paleontology, systematics, medical embryology and mathematical modeling. This essay will trace one of the major pathways, that from evolutionary embryology to Evo-Devo and it will show the interactions of this pathway with two other sources of Evo-Devo: ecological developmental biology and medical developmental biology. Together, these three fields are forming a more inclusive evolutionary developmental biology that is revitalizing and providing answers to old and important questions involving the formation of biodiversity on Earth. The phenotype of Evo-Devo is limited by internal constraints on what could be known given the methods and equipment of the time and it has been framed by external factors that include both academic and global politics

A landscape genetics approach to unravel the complex evolutionary history of the Iberian honey bee hybrid zone

While landscape genetics is in its infancy, it is a rapidly growing research field in part owing to the increasing availability of powerful molecular and analytical tools. By integrating landscape ecology, spatial statistics and population genetics, landscape genetics is allowing an unprecedented understanding of the microevolutionary processes shaping genetic variation, which has important implications for the advance of ecological and evolutionary knowledge. The Iberian honey bee provides a great model system to address evolutionary questions using a landscape genetics framework. First, previous studies suggest that the Iberian honey bee has a hybrid origin and hybrid zones have been favored by evolutionary biologists as powerful natural laboratories to study evolutionary processes. Second, with the publication of the honey bee genome and development of high‐density SNP markers, powerful tools are now available to dissect the relative importance of neutral and adaptive forces in shaping the Iberian honey bee hybrid zone, a goal of central importance as it leads to more robust inferences of demographic history and to identification of adaptive divergence. Herein, we will present an ongoing research project on the Iberian honey bee hybrid zone where the tools of landscape genetics and population genomics will be combined to unravel the challenging evolutionary history of the Iberian honey bee

The Evolution of Diversity

Since the beginning of time, the pre-biological and the biological world have seen a steady increase in complexity of form and function based on a process of combination and re-combination. The current modern synthesis of evolution known as the neo-Darwinian theory emphasises population genetics and does not explain satisfactorily all other occurrences of evolutionary novelty. The authors suggest that symbiosis and hybridisation and the more obscure processes such as polyploidy, chimerism and lateral transfer are mostly overlooked and not featured sufficiently within evolutionary theory. They suggest, therefore, a revision of the existing theory including its language, to accommodate the scientific findings of recent decades