Integrated analysis of root microbiomes of soybean and wheat from agricultural fields

Root associated bacteria are critical for plant growth and health. Understanding the composition and role of root microbiota is crucial toward agricultural practices that are less dependent on chemical fertilization, which has known negative effects on the environment and human health. Here we analyzed the root-associated microbiomes of soybean and wheat under agricultural field conditions. We took samples from 11 different production fields across a large geographic area. We used 16S rRNA pyrosequencing to explore root microbial communities and also obtained 2,007 bacterial isolates from rhizospheres, which were tested for the presence of plant growth promoting (PGP) traits in-vitro. We observed that pH and nitrate content correlated with beta diversity variability of rhizospheric bacterial communities despite the variable field conditions. We described the dominant bacterial groups associated to roots from both crops at a large geographic scale and we found that a high proportion of them (60-70%) showed more than 97% similarity to bacteria from the isolated collection. Moreover, we observed that 55% of the screened isolates presented PGP activities in vitro. These results are a significant step forward in understanding crop-associated microbiomes and suggest that new directions can be taken to promote crop growth and health by modulating root microbiomes.Fil: Rascovan, Nicolas. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Rosario. Instituto de Agrobiotecnología de Rosario; ArgentinaFil: Carbonetto, María Belén. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Rosario. Instituto de Agrobiotecnología de Rosario; ArgentinaFil: Perrig, Diego Sebastián. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Rizobacter Argentina S. A.; ArgentinaFil: Diaz, Marisa. Rizobacter Argentina S. A.; ArgentinaFil: Canciani, Wilter. Rizobacter Argentina S. A.; ArgentinaFil: Abalo, Matías. Rizobacter Argentina S. A.; ArgentinaFil: Alloati, Julieta. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Rosario. Instituto de Agrobiotecnología de Rosario; ArgentinaFil: González Anta, Gustavo. Rizobacter Argentina S. A.; ArgentinaFil: Vazquez, Martin Pablo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Rosario. Instituto de Agrobiotecnología de Rosario; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; Argentin

Phosphate solubilization and multiple plant growth promoting properties of rhizobacteria isolated from chickpea (Cicer aeritinum L.) producing areas of Ethiopia

Chickpea is one of the major legume crops widely grown in Ethiopia. The low availability of phosphorus in soil is among the stresses that constrain the production of this crop in the country. However, there are rhizobacteria capable of solubilizing insoluble forms of phosphorus in soil and make it available to the plant. Thus, this study was aimed at isolation and characterization of phosphate solubilizing bacteria from chickpea rhizosphere. Fifty phosphate solubilizing bacterial strains were isolated from the soil samples, characterized biochemically and identified by 16S rDNA sequences analysis. The results indicate the presence of genera Acinetobacter, Bacillus, Brevibacillus, Burkholderia, Empedobacter, Enterobacter, Pseudomonas, Ralstonia, Sphingomonas and Stenotrophomonas. Phosphate solubilizing efficiencies of the strains were analyzed using different insoluble phosphorus sources and the results show that most isolates released a substantial amount of soluble phosphate from tricalcium phosphate, rock phosphate and bone meal. Screening for multiple plant growth promoting attributes showed that 44 and 18% of them were capable of producing indole acetic acid and inhibiting the growth of Fusarium oxysporum under in vitro conditions, respectively. A direct impact of several strains (Bacillus flexus (PSBC17), Pseudomonas fluorescence (PSBC33), Enterobacter sp. (PSBC35), Enterobacter sakazaki (PSBC79) and Enterobacter sp. (PSBC81)) on the growth of chickpea in pot culture has been demonstrated by the increase in the number of root nodules, shoot dry matter, nitrogen and phosphorus concentration of shoot. Based on the results, we conclude that chickpea rhizosphere harbor phosphate solubilizing bacteria which are diverse in taxonomy and phosphate solubilizing efficiencies. Thus, consecutive studies should focus on field studies on those strains due to their potentially high importance for the phosphorus nutrition of crops in this area and in this context for the improvement of the sustainability of crop production in the country.Keywords: Plant growth promoting rhizobacteria (PGPR), indole acetic acid (IAA), rhizosphere soil, rock phosphate, bone mea

Plant growth promotion of barley (Hordeum vulgare L.) by potassium solubilizing bacteria with multifarious plant growth promoting attributes

Potassium (K) is the foremost macronutrients for growth of plant, soil health and fertility. The huge application of NPK chemical fertilizers negatively impacts the economy and is a threat to environmental sustainability. The rapid depletion of K mineral in soil is due to the application of agrochemicals agricultural fields for the production of crops in India. In present investigation, K-solubilizing microbes (KSM) were isolated and enumerated from cereal crops growing in Sirmour Himachal Pradesh. A total 125 bacteria were isolated and screened for K- solubilization on Aleksandrov agar plates and found that 31 bacterial strains exhibited K-solubilization. These 31 K-solubilizing strains of bacteria were additionally screened for other plant growth promoting (PGP) potential including solubilization of minerals, production of siderophores, ammonia, hydrogen cyanide and indole acetic acids. The performance of an efficient K-solubilizer was evaluated for plant growth promoting ability in pot assay under in vitro conditions. The strain EU-LWNA-25 positively influenced shoot length, fresh weight, carotenoids and total sugar content than the full dose, half dose and control. The strain enhancing physiological and growth parameters was identified by BLASTn analysis as Pseudomonas gessardii EU-LWNA-25. K-solubilizing plant growth promoting bacteria could be suitable bioinoculants for Rabi seasonal crops and overcomes the challenges of sustainable agriculture in K-deficient soil

Isolation of Bacteria with Potential Plant-Promoting Traits and Optimization of Their Growth Conditions

This research aimed at investigating the isolation and identification of bacterial strains with biological nitrogen-fixing capability and phosphate, potassium, and zinc solubilization activities from a durum wheat field under two different tillage practices including 10 years of conventional tillage (CT) and no-tillage (NT) practices. Attempts were also extended to estimate their relative abundances in the soil as well as to develop accurate mathematical models in determining the effect of different temperatures, NaCl concentrations and pH on the growth, and activity of selected isolates. Twelve effective bacterial strains, including Pseudomonas, Acinetobacter, and Comamonas genera, were identified with a great potential to solubilize the insoluble forms of phosphate (from 11.1 to 115.5 mg l−1 at pH 8), potassium (from 32.2 to 35.6 mg l−1 at pH 7), and zinc (from 1.11 to 389.90 mg l−1 at pH 9) as well as to fix N2 gas (from 19.9 to 25.2 mg l−1). To our knowledge, this is the first report of the ability of Comamonas testosteroni and Acinetobacter pittii to fix nitrogen and to solubilize insoluble potassium compound, respectively. Three families, Moraxellaceae, Pseudomonadaceae, and Comamonadaceae, showed a higher percentage of abundance in the NT samples as compared to the CT, but only significant difference was observed in the relative abundance of Pseudomonadaceae (P < 0.01). These strains could be definitively recommended as inoculants to promote plant growth in the wide ranges of pH, salinity levels (with maximum growth and complete inhibition of growth from 0.67–0.92% to 3.5–9.3% NaCl, respectively), and temperatures (2.1–45.1 °C)

Bioremediation of Heavy Metals by Rhizobacteria

Abstract Heavy elements accumulate rapidly in the soil due to industrial activities and the industrial revolution, which significantly impact the morphology, physiology, and yield of crops. Heavy metal contamination will eventually affect the plant tolerance threshold and cause changes in the plant genome and genetic structure. Changes in the plant genome lead to changes in encoded proteins and protein sequences. Consuming these mutated products can seriously affect human and animal health. Bioremediation is a process that can be applied to reduce the adverse effects of heavy metals in the soil. In this regard, bioremediation using plant growth–promoting rhizobacteria (PGPRs) as beneficial living agents can help to neutralize the negative interaction between the plant and the heavy metals. PGPRs suppress the adverse effects of heavy metals and the negative interaction of plant-heavy elements by different mechanisms such as biological adsorption and entrapment of heavy elements in extracellular capsules, reduction of metal ion concentration, and formation of complexes with metal ions inside the cell.</jats:p

The growth promotion of mung bean (Phaseolus radiatus) by Enterobacter asburiae HPP16 in acidic soils

A novel phosphate-solubilizing bacterium HPP16 from plant rhizosphere of Shandong University of Science and Technology districts of Qingdao (China) was isolated and the effects on promoting growth of mung bean (Phaseolus radiatus) seedlings in Campus and Jinshatan; two kinds of acidic soils were studied. HPP16 was identified as Enterobacter asburiae on the basis of 16S rDNA sequencing. It was Indole-3-acetic acid producer, synthesized siderophores and showed acid phosphatase activity. After mung bean was inoculated with HPP16, the germination rate and healthy stand in A-2 (inoculated with fermentation liquid) increased by 26 and 25% compared to A-4 (inoculated with the distilled water; negative control), and were 26 and 31.7% in B-2 (inoculated with fermentation liquid) compared to B-4 (inoculated with the distilled water, negative control). The individual plant height, fresh weight and dry weight in A-2 increased by 7, 10 and 6% compared to A-4, and increased by 8.5, 24 and 9% in B-2 compared to B-4. Mung bean could also increase to absorb K+, Na+ and Mg2+ and improve the production of endogenous indole acetic acid (IAA), and also it reduced the production of abscisic acid (ABA). Findings of this study suggest that HPP16 may be exploited for developing a potential source of biofertilizer.Key words: Plant growth promoting rhizobacteria, indole-3-acetic acid, siderophore, Enterobacter asburiae HPP16, mung bean, abscisic acid, phosphate-solubilizing bacteria (PSB)

Plant growth promoting rhizobacteria as a biological tool for augmenting productivity and controlling disease in agriculturally important crop- A review

The ecological role of plant growth promoting bacteria associated with plant root environment is currently gaining increased attention. The tremendous use of chemical fertilizers and pesticides which are environmentally harmful can be replaced with these microbes generally called as Plant Growth Promoting Rhizobacteria (PGPR). These microbes can be developed as biofertilizers because they are eco-friendly, cost effective and are natural living organisms. The advantages of these microorganism rely on their production of novel bioactive metabolites that inhibit various pathogens in soil as well as their vast mechanisms in improving growth, productivity and yield in agriculturally important crops. Apart from this, their role in nutrient acquisition, soil fertility improvement and stress tolerance are also inevitable. This review represents the present scenario of beneficial bacteria as plant growth agents and disease control tools. They have been extensively studied for plant disease suppression, plant growth modulation, and interaction with plants. Here, some mechanisms employed by plant growth promoting bacteria from different environments are discussed

Bio-Organo-Phos: A Sustainable Approach for Managing Phosphorus Deficiency in Agricultural Soils

Sustainable agriculture is essential for a positive relationship between supply and demand of food for the growing world population. This relationship was found to be affected by many environmental factors, including biotic and abiotic. From the point of view of crop nutrition, sustainability in the supply of essential nutrients particularly phosphorus is vital. Due to the energy crisis, the fluctuation in the prices of chemical fertilizers, environmental concerns, and cessation in the supply of high quality rock phosphate (RP) are hindering the use of chemical phosphatic fertilizers for sustainable crop production. Therefore, there is great need for a sustainable solution to this problem. It could be solved by employing a strategy to use native low quality RP. It is only possible by composting of organic material in the presence of RP and phosphate solubilizing microorganisms. During composting, most of organic P is mineralized. Due to release of organic acids, P availability to crop plants increases. In this chapter, the importance of economical and sustainable sources of P and comparative efficacy of the use of organic fertilizer containing RP for legumes is critically reviewed

Plant growth promotion activities of Bacillus spp. isolated from Jakrem hot water spring of Meghalaya, North East India

The study aims to investigate plant growth promotion (PGP) activities of thermophilic bacteria isolated from the Jakrem hot spring in Meghalaya, North-East India, and determine their effect on Brassica juncea's growth. The bacteria were isolated by a culture-dependent approach following a serial dilution method in a nutrient agar medium. All the isolates were determined for PGP attributes such as indole acetic acid, phosphate solubilization, hydrolytic enzymes, and siderophore production. The potent bacterial isolates were characterized by 16S rDNA sequencing and phylogenetic analysis. Altogether, 53 bacterial isolates were obtained, most belonging to the genus Bacillus. Of the total isolates, 37.7% exhibited both PGP and hydrolytic enzyme activities. Three isolates, namely JAB1, JAB8, and JAB100, showed promising PGP and were identified as Bacillus velezensis, B. proteolyticus, and Bacillus sp., respectively. The PGP attributes of these isolates were determined in vivo on B. juncea, and their effects were measured in terms of shoot and root length biomass and biochemical contents. It was observed that combined inoculation of all three isolates significantly enhanced the growth and development of B. juncea, evident by increased shoot and root length, fresh and dry weight, and higher levels of protein, phenol, flavonoid, and chlorophyll content compared to the control. In conclusion, the study highlights the potential application of thermophilic Bacillus spp. from hot springs as bioinoculants to enhance crop productivity in sustainable agricultural practices